Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

3297592 .. 3298550

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATAATGGAGACTTGTCACAACATGAAACTAGTCCAGGATCACATTCACATTCAAAGATCCACTTTATCTCCACCATTCAAACATCTACTACCTCAGACTCAATCCGAGCATCTCCAACACCTTCAGCTCCACCAGTTTCAGATGATTATCTAGATGATCCTTTTCAGTGTCGATCAATTGAATCCACTCCTATCCAGAAAGGTGAAAGTTCTTCGTGTGTGATATGTATGGATGCTGCAGTTGAAGGTGCTTTTATCCCATGTGGGCATAGGGCCGGATGCATGGCTTGTATGAATGACATCAAAGATAAGAAGTGGGATTGCCCCGTCTGCCGGGCAAAGGTTGATCAGGTTCTAAGGCTCTATGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

126

Amino Acids

13.53

Weight (kDa)

5.37

Isoelectric Point (pI)

52.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	71 - 119	1.1e-14	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	73 - 113	6e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	49, 55, 155
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	336, 343
AgsI	TTSAA	4 cut(s)	57, 83, 185, 248
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	3 cut(s)	49, 55, 155
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	6
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	2 cut(s)	33, 155
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	39, 338
BmgT120I	GGNCC	1 cut(s)	276
BmrFI	CCNGG	2 cut(s)	39, 338
BmsI	GCATC	3 cut(s)	122, 226, 272
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 343
Bse1I	ACTGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	241, 287
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	336, 343
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	279, 337
BslI	CCNNNNNNNGG	2 cut(s)	336, 343
BsmAI	GTCTC	1 cut(s)	6
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	5 cut(s)	41, 60, 160, 176, 349
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	3 cut(s)	49, 55, 155
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	5 cut(s)	41, 60, 160, 176, 349
Bst2UI	CCWGG	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	97, 359
BstF5I	GGATG	2 cut(s)	241, 287
BstKTI	GATC	5 cut(s)	44, 63, 163, 179, 352
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	5 cut(s)	41, 60, 160, 176, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	37, 336
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	241, 287
BtsIMutI	CAGTG	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	276
CviAII	CATG	3 cut(s)	26, 264, 286
CviJI	RGCY	4 cut(s)	131, 278, 290, 364
CviKI_1	RGCY	4 cut(s)	131, 278, 290, 364
DdeI	CTNAG	2 cut(s)	97, 359
DpnI	GATC	5 cut(s)	43, 62, 162, 178, 351
DpnII	GATC	5 cut(s)	41, 60, 160, 176, 349
Eco57I	CTGAAG	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	287
FaeI	CATG	3 cut(s)	29, 267, 289
FaiI	YATR	9 cut(s)	27, 229, 233, 265, 273, 287, 296, 369, 376
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	3 cut(s)	25, 263, 285
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	248, 294
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	33, 155
GluI	GCNGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	2 cut(s)	279, 337
Hin1II	CATG	3 cut(s)	29, 267, 289
HinfI	GANTC	2 cut(s)	101, 185
HpaII	CCGG	2 cut(s)	279, 337
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	100, 110, 145
Hpy188III	TCNNGA	2 cut(s)	155, 199
HpyAV	CCTTC	2 cut(s)	135, 242
HpyCH4V	TGCA	2 cut(s)	242, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	2 cut(s)	97, 359
Hsp92II	CATG	3 cut(s)	29, 267, 289
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	41, 60, 160, 176, 349
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	7 cut(s)	24, 51, 150, 212, 292, 338, 350
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	3 cut(s)	122, 226, 272
MaeI	CTAG	2 cut(s)	33, 155
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	5 cut(s)	43, 62, 162, 178, 351
MboI	GATC	5 cut(s)	41, 60, 160, 176, 349
MboII	GAAGA	1 cut(s)	207
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	1 cut(s)	60
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	1 cut(s)	106
Mph1103I	ATGCAT	1 cut(s)	287
MspI	CCGG	2 cut(s)	279, 337
MspR9I	CCNGG	2 cut(s)	39, 338
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	5 cut(s)	41, 60, 160, 176, 349
NlaIII	CATG	3 cut(s)	29, 267, 289
NmuCI	GTSAC	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	60
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	41, 60, 160, 176, 349
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	39, 338
SetI	ASST	7 cut(s)	98, 127, 133, 208, 253, 348, 357
SfaNI	GCATC	3 cut(s)	122, 226, 272
SfcI	CTRYAG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	32
Sse9I	AATT	1 cut(s)	180
SspMI	CTAG	2 cut(s)	33, 155
StyD4I	CCNGG	2 cut(s)	37, 336
TaqI	TCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	42, 311
TspRI	CASTG	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	154
XspI	CTAG	2 cut(s)	33, 155
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.