Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

6495423 .. 6504447

Gene Structure 9025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGACGCCATAGATGGCATCGCTGCTATGCTTGCCCCCTCCGACGTTGTTGACACGGGGAGGGCTGACGGTGATGCACCGCGGGATGGCTACCGCCCTGCGAGGCATATTTGTTTGTTCTCAGGTTGGTTGCGCGAGTTTTATGGTCCTGGATTTCTGGAAGTACTTGCTCCTCAGTTGGTTTCAACAAAAGTTATATTAATCTTTTTCTTTCTTTCTGATAAGCAGGATGCTCAATCACTTACAGTTATTGGATTGTGGAAAGTCAATCTGGAAGAACCCAAATCTCACCTGTCTGATCCATTGGTTATAATTCATGATATCTCCACAAAAACACGCATTAGAATTGCATCTGCAAATGAAAATGACAAGCAACAATTTCAGTGGTTTAGCAATACATGCAAAGGAATTCCACAGGCACGACCTGCATTTTTGGGTAATAACAATCCAGCAACTGCACCACCAGCAACTGCAGAAGATATAGAGTTGGCTGTGGCTCTCAGTGCCTCCCTTCATTCTGCTTCACAGGAGAGACCACGCTCAAGTAGCTCCGGTACCTCTACATATGCATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

193

Amino Acids

20.95

Weight (kDa)

5.52

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	436
Acc65I	GGTACC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	557
AccII	CGCG	2 cut(s)	85, 138
AciI	CCGC	3 cut(s)	83, 85, 97
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	168, 559
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	189
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	1 cut(s)	552
AluI	AGCT	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	2 cut(s)	458, 473
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	411
AseI	ATTAAT	1 cut(s)	203
Asp718I	GGTACC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	86, 284
AvaII	GGWCC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	2 cut(s)	11, 83
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmcAI	AGTACT	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	4 cut(s)	30, 67, 223, 362
BpuEI	CTTGAG	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	94, 238
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	3 cut(s)	138, 191, 517
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	2 cut(s)	85, 138
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	529
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	3 cut(s)	83, 85, 97
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	137, 190, 516
BspFNI	CGCG	2 cut(s)	85, 138
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	559
BspMAI	CTGCAG	1 cut(s)	478
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	301
BssNI	GRCGYC	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	74, 250
BstACI	GRCGYC	1 cut(s)	9
BstAPI	GCANNNNNTGC	2 cut(s)	402, 428
BstC8I	GCNNGC	2 cut(s)	36, 574
BstDEI	CTNAG	3 cut(s)	124, 177, 503
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	94, 238
BstFNI	CGCG	2 cut(s)	85, 138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 402, 428, 467, 506, 549
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	2 cut(s)	405, 576
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	2 cut(s)	85, 138
BstV1I	GCAGC	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	94, 238
BtsIMutI	CAGTG	2 cut(s)	392, 511
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	36, 574
CaiI	CAGNNNCTG	2 cut(s)	458, 473
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	149
Cfr42I	CCGCGG	1 cut(s)	86
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	167, 558
CspCI	CAANNNNNGTGG	2 cut(s)	368, 403
CviAII	CATG	3 cut(s)	320, 402, 573
CviJI	RGCY	6 cut(s)	5, 68, 93, 494, 500, 552
CviKI_1	RGCY	6 cut(s)	5, 68, 93, 494, 500, 552
CviQI	GTAC	2 cut(s)	167, 558
DdeI	CTNAG	3 cut(s)	124, 177, 503
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	529
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	574
FaeI	CATG	3 cut(s)	323, 405, 576
FatI	CATG	3 cut(s)	319, 401, 572
FauI	CCCGC	1 cut(s)	78
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	101, 245
Fsp4HI	GCNGC	1 cut(s)	27
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	323, 405, 576
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	86, 284
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	46, 223, 301
Hpy188III	TCNNGA	3 cut(s)	161, 275, 320
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	2 cut(s)	11, 50
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	74, 250
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	8 cut(s)	80, 353, 359, 405, 431, 461, 476, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 402, 428, 467, 506, 549
HpyF3I	CTNAG	3 cut(s)	124, 177, 503
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	323, 405, 576
HspAI	GCGC	1 cut(s)	136
KpnI	GGTACC	1 cut(s)	561
KspI	CCGCGG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	2 cut(s)	178, 557
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	4 cut(s)	30, 67, 223, 362
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	2 cut(s)	290, 491
MluCI	AATT	4 cut(s)	315, 348, 380, 411
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	52, 57, 99, 186, 520, 571
Mph1103I	ATGCAT	1 cut(s)	574
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	571
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	2 cut(s)	85, 138
MwoI	GCNNNNNNNGC	6 cut(s)	35, 402, 428, 467, 506, 549
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	323, 405, 576
NlaIV	GGNNCC	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	2 cut(s)	405, 576
PaeI	GCATGC	1 cut(s)	576
PagI	TCATGA	1 cut(s)	319
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	2 cut(s)	458, 473
RsaI	GTAC	2 cut(s)	168, 559
RsaNI	GTAC	2 cut(s)	167, 558
RseI	CAYNNNNRTG	1 cut(s)	571
SacII	CCGCGG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	6 cut(s)	51, 130, 297, 430, 554, 563
SfaNI	GCATC	4 cut(s)	30, 67, 223, 362
SfcI	CTRYAG	1 cut(s)	474
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SphI	GCATGC	1 cut(s)	576
Sse9I	AATT	4 cut(s)	315, 348, 380, 411
SsiI	CCGC	3 cut(s)	83, 85, 97
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	74, 250
TaiI	ACGT	1 cut(s)	51
TasI	AATT	4 cut(s)	315, 348, 380, 411
TatI	WGTACW	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	2 cut(s)	392, 511
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	308, 378, 506
TspRI	CASTG	2 cut(s)	392, 511
VpaK11BI	GGWCC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	203
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	2 cut(s)	405, 576
ZrmI	AGTACT	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.