Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Reverse (-)

57420765 .. 57421839

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTACTGCATGCTGCCAACATTTAAGATTGTGACCCTTGATGCACGACCTGCATTTTTGGGTAATAACAATCCAGCAACTGCACCACCAGCAACTGCAGAAGATATAGAGTTGGCCGTGGCTCTCAGTGCCTCCCTTCATTCTGCTTCACAGGATAGACCACGCTCAAGTAGCTCCGGTACCTCTACAAATGCTTCTAACATGAATGGTTGGAGTACGTCCACAAACACTGGCAACTACAACGGTTGGGATGCAACAATTGTAGCTGCTTCTCCAAAAGTACGTAGCAGTGACTGGTCAGGGGTTCAAACTGGCCTAGTTGGTGACTCAATTGAACATGCAAACATCCAGGAAATCTCTCCTACCCAAACAACTCCTACCTCTGATTCAGTTATATCATCTTCAACACAATCAGCTGCAATCCCATCAGCTTCACCAGTTTTAGATGAAAGTCTAGATGAATATCCTATCCACTATCCATCAATTGATGACAGCCCTATTGATCTATCAAACCCAACTGCTGAAAGTATACCTCCTACAGTTGATGAAAAGAAAGAGATTAAAGGTAAGAAATGGGGCTGTCCTGTCTGCCGCGCCAAGAGTGAACAGGTTGTAAGGCTCTATGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

211

Amino Acids

22.18

Weight (kDa)

4.69

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	179
AccI	GTMKAC	1 cut(s)	529
AccII	CGCG	1 cut(s)	594
AciI	CCGC	1 cut(s)	592
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	4 cut(s)	5, 181, 217, 282
AgsI	TTSAA	3 cut(s)	308, 335, 405
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	174, 266, 416, 431
AluI	AGCT	4 cut(s)	174, 266, 416, 431
AlwNI	CAGNNNCTG	3 cut(s)	80, 95, 294
AoxI	GGCC	2 cut(s)	114, 313
ApeKI	GCWGC	3 cut(s)	13, 266, 416
Asp718I	GGTACC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	596
AsuHPI	GGTGA	2 cut(s)	335, 426
BanI	GGYRCC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	253, 403
BccI	CCATC	2 cut(s)	433, 487
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	350
BfaI	CTAG	2 cut(s)	317, 455
BfmI	CTRYAG	2 cut(s)	96, 537
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	4 cut(s)	14, 267, 417, 592
BlsI	GCNGC	4 cut(s)	15, 268, 418, 593
Bme1390I	CCNGG	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	31, 241
BpuEI	CTTGAG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	235, 299, 316, 437
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	256, 345
BseJI	GATNNNNATC	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	4 cut(s)	235, 299, 316, 437
BseXI	GCAGC	2 cut(s)	253, 403
BsgI	GTGCAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	116, 315
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	2 cut(s)	116, 315
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	1 cut(s)	592
BspANI	GGCC	2 cut(s)	116, 315
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	4 cut(s)	235, 299, 316, 437
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	502
BssNAI	GTATAC	1 cut(s)	530
Bst1107I	GTATAC	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	245, 541
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	256, 345
BstFNI	CGCG	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	1 cut(s)	505
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 89, 128, 171
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	13, 341
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	96, 537
BstSNI	TACGTA	1 cut(s)	284
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	253, 403
BstZ17I	GTATAC	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	116, 315
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	256, 345
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	3 cut(s)	133, 228, 295
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	3 cut(s)	80, 95, 294
CfoI	GCGC	1 cut(s)	596
Csp6I	GTAC	4 cut(s)	4, 180, 216, 281
CviAII	CATG	3 cut(s)	10, 202, 338
CviQI	GTAC	4 cut(s)	4, 180, 216, 281
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	114
Eco105I	TACGTA	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	13, 205, 341
FaiI	YATR	8 cut(s)	11, 107, 203, 339, 395, 530, 624, 631
FatI	CATG	3 cut(s)	9, 201, 337
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	4 cut(s)	14, 267, 417, 592
FokI	GGATG	2 cut(s)	263, 332
Fsp4HI	GCNGC	4 cut(s)	14, 267, 417, 592
FspBI	CTAG	2 cut(s)	317, 455
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	4 cut(s)	14, 267, 417, 592
HaeIII	GGCC	2 cut(s)	116, 315
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	3 cut(s)	13, 205, 341
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HinfI	GANTC	2 cut(s)	326, 386
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	335, 426
Hpy166II	GTNNAC	3 cut(s)	222, 530, 605
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	3 cut(s)	222, 530, 605
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	245, 541
HpyCH4IV	ACGT	2 cut(s)	218, 283
HpyCH4V	TGCA	8 cut(s)	9, 44, 53, 83, 98, 254, 341, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 89, 128, 171
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	218, 283
Hsp92II	CATG	3 cut(s)	13, 205, 341
HspAI	GCGC	1 cut(s)	594
KpnI	GGTACC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	2 cut(s)	253, 403
LweI	GCATC	2 cut(s)	31, 241
MaeI	CTAG	2 cut(s)	317, 455
MaeII	ACGT	2 cut(s)	218, 283
MaeIII	GTNAC	3 cut(s)	31, 290, 323
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	2 cut(s)	113, 393
MfeI	CAATTG	3 cut(s)	258, 330, 483
MluCI	AATT	3 cut(s)	258, 330, 483
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	142, 193, 391, 543
MseI	TTAA	2 cut(s)	24, 561
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	3 cut(s)	258, 330, 483
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	4 cut(s)	50, 89, 128, 171
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	3 cut(s)	13, 205, 341
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	31, 290, 323
NspI	RCATGY	2 cut(s)	13, 341
PaeI	GCATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	4 cut(s)	15, 268, 418, 593
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	3 cut(s)	80, 95, 294
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	4 cut(s)	5, 181, 217, 282
RsaNI	GTAC	4 cut(s)	4, 180, 216, 281
SaqAI	TTAA	2 cut(s)	24, 561
SatI	GCNGC	4 cut(s)	14, 267, 417, 592
Sau3AI	GATC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	2 cut(s)	31, 241
SfcI	CTRYAG	2 cut(s)	96, 537
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SnaBI	TACGTA	1 cut(s)	284
SphI	GCATGC	1 cut(s)	13
Sse9I	AATT	3 cut(s)	258, 330, 483
SsiI	CCGC	1 cut(s)	592
SspMI	CTAG	2 cut(s)	317, 455
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	245, 541
TaiI	ACGT	2 cut(s)	221, 286
TasI	AATT	3 cut(s)	258, 330, 483
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	24, 561
Tru9I	TTAA	2 cut(s)	24, 561
TscAI	CASTG	3 cut(s)	133, 235, 295
TseFI	GTSAC	3 cut(s)	31, 290, 323
TseI	GCWGC	3 cut(s)	13, 266, 416
Tsp45I	GTSAC	3 cut(s)	31, 290, 323
TspDTI	ATGAA	5 cut(s)	128, 218, 462, 474, 561
TspRI	CASTG	3 cut(s)	133, 235, 295
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	2 cut(s)	13, 341
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	2 cut(s)	317, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.