Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

7696513 .. 7701759

Gene Structure 5247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG042400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGGGCTTCAGCAATCCAAAGATGAGCTTCTCTACGACCAAGTCAGCTATGGCAACGTCGAAGGGATCAAAACCCTTCGCACCCAAGGCGCAGGCCTCGAGTTTATTGATAGGGATGGCAAGACCCCTTTGATTGTGGCTTGTATGAATCCTGGGCTTACCAATGTTGCCAAGACCTTGATTGACCTCGGTGCAGATGTCAATGTTTATCGCCCCGGTCGGCATGCCGGGACTCCTCTGCATCATGCAGCTAAGAGAGGGCTCGAAGAGACTGTCAATTTACTTCTTTCGCGCGGAGCGAATGCGTTGATCGTGAATGATGACTGTCAGAGCCCTCTTGATGTTGCTAGAGCAAAAGGGCAGAGTGCTGTTGTCCGCGCAATTGAGAGGCATATTTGCTTGTTCTCGGGTTGGTTGCGCGAGTTGTATGGTCCTGGATTTCTGGAACTACTTGCTCCGAAGTTGGTTTCAAGAAAAGTTTGGGTTGTTGTTTTGCCATGTGGTTCCCGCAAACCTACCATGCCTTACAAGTTGGAGCTTGCCATATATTCTAGTATGCAGGATGCTCAACCACGTACAGTTATTGGATTGTGGAAAGTCAATCTGGAAGAACCAAAATCTCAACTGTCTGATCCTTCGGTTATAATTCATGATATCTCCACAATCCCACGAGGCAGGAGGCGGAGACAAAGGCATCAAAAACTTAGGCAAGCACGCATCAGACTTGCATCTGGAAATGAAACTGACAGGCAACAACTTCAGTGGTTTAGCAATGCATGCAAAGGAATTCCACAGGCACAACCTGCATTTTTGGGTAATAACAATCCAGCAACTGCACCACCAGCAACTGCAGAAGATATAGAGTTGGCCATTGCTCTCAGCGCCTCCCTTCATTCTGCTTCACAGGAGAGACCACCCTTTCCGGATGCACACCCAATCAATGAATCAATTGCCTCAAGTAGCTCCAGTACCTCTACAAATGCTTCTAACTTGAATGGTTGGAGTACGTCCACAAACACTGGCAGCTACAACGGTTGGGATGCAACAATTGCAGCTGCTTCTCCAAAAGTAAGTAGCAGCGACTGGTCAGGGGTTCAAACTGGCCCAGTTGGTGGCTCAAGTGGACATGCAAACATCCAGGAAATATCTCCTACCCAGACAACTACTACCCCAGATTTAGTCGTATCAGCTTCAACACAATCAGCTGCAATCCCATCAGTTCCACCCCCATCAGCTCCACCAGTTCTAGATGAAAGTCTAGATGAATATCCTATCCACTATCCATCAATTGATGACAGCCCTATTGATCTATCAAACCCAAGTGCTCAAAGTATACCTCATACAGTCGATGAAAAGAAAGGTGATGGAGCCTCTTCTTCATGTGTGATTTGTTTAGATGCACCAGTTGAAGGAGCTTGCATCCCATGTGGCCATATGGCTGGATGCATGTCTTGTTTGACTGAGATTAAGGGTAAGAAATGGGGCTGTCCTGTCTGCCGAGCTAAGATTGAACAGGTTGTAAGGCTCTATGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

512

Amino Acids

54.78

Weight (kDa)

6.64

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 69	9.9e-06	Ankyrin repeats (3 copies)
Ank_5	PF13857	60 - 116	2.1e-06	Ankyrin repeats (many copies)
zf-C3HC4_3	PF13920	459 - 506	3.1e-13	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	811
AccB7I	CCANNNNNTGG	1 cut(s)	1112
AccI	GTMKAC	1 cut(s)	1333
AccII	CGCG	4 cut(s)	292, 294, 378, 420
AccIII	TCCGGA	1 cut(s)	922
AciI	CCGC	4 cut(s)	294, 376, 508, 682
AclWI	GGATC	2 cut(s)	74, 626
AcoI	YGGCCR	2 cut(s)	867, 1429
AcsI	RAATTY	1 cut(s)	786
AcuI	CTGAAG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	577, 970, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	1112, 1409
AgsI	TTSAA	6 cut(s)	471, 994, 1097, 1194, 1409, 1511
AjnI	CCWGG	3 cut(s)	151, 433, 1137
Alw21I	GWGCWC	1 cut(s)	1327
Alw26I	GTCTC	3 cut(s)	263, 679, 904
AlwI	GGATC	2 cut(s)	74, 626
AlwNI	CAGNNNCTG	3 cut(s)	833, 848, 1083
Ama87I	CYCGRG	2 cut(s)	98, 406
Aor13HI	TCCGGA	1 cut(s)	922
AoxI	GGCC	4 cut(s)	94, 867, 1102, 1429
ApeKI	GCWGC	6 cut(s)	248, 1023, 1052, 1055, 1077, 1205
ApoI	RAATTY	1 cut(s)	786
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspLEI	GCGC	5 cut(s)	92, 294, 380, 420, 884
AspS9I	GGNCC	2 cut(s)	431, 1103
AsuC2I	CCSGG	2 cut(s)	216, 229
AsuHPI	GGTGA	1 cut(s)	1373
AvaI	CYCGRG	2 cut(s)	98, 406
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	2 cut(s)	869, 1431
BanII	GRGCYC	2 cut(s)	264, 335
BauI	CACGAG	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	1327
BbvI	GCAGC	6 cut(s)	260, 1035, 1042, 1064, 1089, 1192
BccI	CCATC	5 cut(s)	110, 1222, 1237, 1291, 1358
BciT130I	CCWGG	3 cut(s)	153, 435, 1139
BcnI	CCSGG	2 cut(s)	216, 229
BcoDI	GTCTC	3 cut(s)	263, 679, 904
BfaI	CTAG	4 cut(s)	348, 552, 1247, 1259
BfmI	CTRYAG	1 cut(s)	849
BfoI	RGCGCY	1 cut(s)	885
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	6 cut(s)	249, 1024, 1053, 1056, 1078, 1206
BlsI	GCNGC	6 cut(s)	250, 1025, 1054, 1057, 1079, 1207
Bme1390I	CCNGG	5 cut(s)	153, 216, 229, 435, 1139
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	98, 406
BmgT120I	GGNCC	2 cut(s)	431, 1103
BmiI	GGNNCC	2 cut(s)	505, 1369
BmrFI	CCNGG	5 cut(s)	153, 216, 229, 435, 1139
BmrI	ACTGGG	1 cut(s)	1100
BmuI	ACTGGG	1 cut(s)	1100
BpmI	CTGGAG	1 cut(s)	949
BpuEI	CTTGAG	2 cut(s)	940, 1102
BpuMI	CCSGG	2 cut(s)	216, 229
BsaAI	YACGTR	1 cut(s)	575
BsaBI	GATNNNNATC	1 cut(s)	1266
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	4 cut(s)	85, 152, 187, 214
BsaWI	WCCGGW	1 cut(s)	922
Bsc4I	CCNNNNNNNGG	2 cut(s)	1112, 1409
Bse1I	ACTGG	7 cut(s)	966, 1024, 1088, 1105, 1106, 1241, 1403
Bse3DI	GCAATG	2 cut(s)	778, 870
Bse8I	GATNNNNATC	1 cut(s)	1266
BseAI	TCCGGA	1 cut(s)	922
BseBI	CCWGG	3 cut(s)	153, 435, 1139
BseDI	CCNNGG	4 cut(s)	85, 152, 187, 214
BseGI	GGATG	7 cut(s)	121, 568, 931, 1045, 1134, 1419, 1448
BseJI	GATNNNNATC	1 cut(s)	1266
BseLI	CCNNNNNNNGG	2 cut(s)	1112, 1409
BseMI	GCAATG	2 cut(s)	778, 870
BseMII	CTCAG	2 cut(s)	892, 1452
BseNI	ACTGG	7 cut(s)	966, 1024, 1088, 1105, 1106, 1241, 1403
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	6 cut(s)	260, 1035, 1042, 1064, 1089, 1192
BsgI	GTGCAG	2 cut(s)	213, 819
Bsh1236I	CGCG	4 cut(s)	292, 294, 378, 420
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	96, 869, 1104, 1431
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	1327
BsiHKCI	CYCGRG	2 cut(s)	98, 406
BsiSI	CCGG	3 cut(s)	216, 228, 923
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	1112, 1409
BsmAI	GTCTC	3 cut(s)	263, 679, 904
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	96, 869, 1104, 1431
Bso31I	GGTCTC	1 cut(s)	904
BsoBI	CYCGRG	2 cut(s)	98, 406
Bsp1286I	GDGCHC	3 cut(s)	264, 335, 1327
Bsp13I	TCCGGA	1 cut(s)	922
Bsp143I	GATC	4 cut(s)	66, 309, 631, 1306
BspACI	CCGC	4 cut(s)	294, 376, 508, 682
BspANI	GGCC	4 cut(s)	96, 869, 1104, 1431
BspCNI	CTCAG	2 cut(s)	891, 1453
BspEI	TCCGGA	1 cut(s)	922
BspFNI	CGCG	4 cut(s)	292, 294, 378, 420
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	505, 1369
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	2 cut(s)	74, 626
BspTNI	GGTCTC	1 cut(s)	904
BsrDI	GCAATG	2 cut(s)	778, 870
BsrI	ACTGG	7 cut(s)	966, 1024, 1088, 1105, 1106, 1241, 1403
BssECI	CCNNGG	4 cut(s)	85, 152, 187, 214
BssMI	GATC	4 cut(s)	66, 309, 631, 1306
BssNAI	GTATAC	1 cut(s)	1334
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	85
Bst1107I	GTATAC	1 cut(s)	1334
Bst2BI	CACGAG	1 cut(s)	669
Bst2UI	CCWGG	3 cut(s)	153, 435, 1139
Bst4CI	ACNGT	6 cut(s)	274, 326, 580, 627, 1034, 1345
Bst6I	CTCTTC	2 cut(s)	261, 1378
BstAPI	GCANNNNNTGC	3 cut(s)	777, 803, 1049
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	7 cut(s)	94, 225, 540, 711, 715, 778, 1417
BstDEI	CTNAG	5 cut(s)	252, 704, 878, 1461, 1503
BstF5I	GGATG	7 cut(s)	121, 568, 931, 1045, 1134, 1419, 1448
BstFNI	CGCG	4 cut(s)	292, 294, 378, 420
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	5 cut(s)	92, 294, 380, 420, 884
BstKTI	GATC	4 cut(s)	69, 312, 634, 1309
BstMAI	GTCTC	3 cut(s)	263, 679, 904
BstMBI	GATC	4 cut(s)	66, 309, 631, 1306
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 777, 803, 842, 881, 1049
BstNI	CCWGG	3 cut(s)	153, 435, 1139
BstNSI	RCATGY	4 cut(s)	227, 780, 1130, 1450
BstSCI	CCNGG	5 cut(s)	151, 214, 227, 433, 1137
BstSFI	CTRYAG	1 cut(s)	849
BstUI	CGCG	4 cut(s)	292, 294, 378, 420
BstV1I	GCAGC	6 cut(s)	260, 1035, 1042, 1064, 1089, 1192
BstXI	CCANNNNNNTGG	1 cut(s)	1439
BstZ17I	GTATAC	1 cut(s)	1334
BsuRI	GGCC	4 cut(s)	96, 869, 1104, 1431
BtsCI	GGATG	7 cut(s)	121, 568, 931, 1045, 1134, 1419, 1448
BtsIMutI	CAGTG	2 cut(s)	767, 1017
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	7 cut(s)	94, 225, 540, 711, 715, 778, 1417
CaiI	CAGNNNCTG	3 cut(s)	833, 848, 1083
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	5 cut(s)	92, 294, 380, 420, 884
Cfr13I	GGNCC	2 cut(s)	431, 1103
Csp6I	GTAC	3 cut(s)	576, 969, 1005
CspCI	CAANNNNNGTGG	2 cut(s)	743, 778
CviQI	GTAC	3 cut(s)	576, 969, 1005
DdeI	CTNAG	5 cut(s)	252, 704, 878, 1461, 1503
DpnI	GATC	4 cut(s)	68, 311, 633, 1308
DpnII	GATC	4 cut(s)	66, 309, 631, 1306
EaeI	YGGCCR	2 cut(s)	867, 1429
Eam1104I	CTCTTC	2 cut(s)	261, 1378
EarI	CTCTTC	2 cut(s)	261, 1378
EciI	GGCGGA	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	264, 335
Eco31I	GGTCTC	1 cut(s)	904
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	743
Eco88I	CYCGRG	2 cut(s)	98, 406
EcoRI	GAATTC	1 cut(s)	786
EcoRII	CCWGG	3 cut(s)	151, 433, 1137
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	85
EcoT22I	ATGCAT	2 cut(s)	778, 1448
EcoT38I	GRGCYC	2 cut(s)	264, 335
ErhI	CCWWGG	1 cut(s)	85
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	244
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	1 cut(s)	1434
FblI	GTMKAC	1 cut(s)	1333
Fnu4HI	GCNGC	6 cut(s)	249, 1024, 1053, 1056, 1078, 1206
FokI	GGATG	7 cut(s)	128, 575, 938, 1052, 1121, 1406, 1455
FriOI	GRGCYC	2 cut(s)	264, 335
Fsp4HI	GCNGC	6 cut(s)	249, 1024, 1053, 1056, 1078, 1206
FspBI	CTAG	4 cut(s)	348, 552, 1247, 1259
GlaI	GCGC	5 cut(s)	91, 293, 379, 419, 883
GluI	GCNGC	6 cut(s)	249, 1024, 1053, 1056, 1078, 1206
GsuI	CTGGAG	1 cut(s)	949
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	4 cut(s)	96, 869, 1104, 1431
HapII	CCGG	3 cut(s)	216, 228, 923
HhaI	GCGC	5 cut(s)	92, 294, 380, 420, 884
Hin6I	GCGC	5 cut(s)	90, 292, 378, 418, 882
HinP1I	GCGC	5 cut(s)	90, 292, 378, 418, 882
HinfI	GANTC	3 cut(s)	148, 232, 944
HpaII	CCGG	3 cut(s)	216, 228, 923
HphI	GGTGA	1 cut(s)	1373
Hpy166II	GTNNAC	3 cut(s)	1011, 1124, 1334
Hpy188I	TCNGA	4 cut(s)	330, 459, 631, 722
Hpy8I	GTNNAC	3 cut(s)	1011, 1124, 1334
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	5 cut(s)	56, 86, 645, 899, 1403
HpyCH4III	ACNGT	6 cut(s)	274, 326, 580, 627, 1034, 1345
HpyCH4IV	ACGT	3 cut(s)	57, 574, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 777, 803, 842, 881, 1049
HpyF3I	CTNAG	5 cut(s)	252, 704, 878, 1461, 1503
HpySE526I	ACGT	3 cut(s)	57, 574, 1007
HspAI	GCGC	5 cut(s)	90, 292, 378, 418, 882
Kpn2I	TCCGGA	1 cut(s)	922
Kzo9I	GATC	4 cut(s)	66, 309, 631, 1306
LmnI	GCTCC	7 cut(s)	296, 460, 535, 968, 1240, 1367, 1412
Lsp1109I	GCAGC	6 cut(s)	260, 1035, 1042, 1064, 1089, 1192
MaeI	CTAG	4 cut(s)	348, 552, 1247, 1259
MaeII	ACGT	3 cut(s)	57, 574, 1007
MalI	GATC	4 cut(s)	68, 311, 633, 1308
MboI	GATC	4 cut(s)	66, 309, 631, 1306
MboII	GAAGA	5 cut(s)	278, 620, 866, 1365, 1368
MfeI	CAATTG	4 cut(s)	381, 948, 1047, 1287
MhlI	GDGCHC	3 cut(s)	264, 335, 1327
MlsI	TGGCCA	2 cut(s)	869, 1431
MluCI	AATT	7 cut(s)	277, 381, 645, 786, 948, 1047, 1287
MluNI	TGGCCA	2 cut(s)	869, 1431
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	2 cut(s)	513, 980
Mox20I	TGGCCA	2 cut(s)	869, 1431
Mph1103I	ATGCAT	2 cut(s)	778, 1448
MroI	TCCGGA	1 cut(s)	922
MscI	TGGCCA	2 cut(s)	869, 1431
MseI	TTAA	1 cut(s)	1467
Msp20I	TGGCCA	2 cut(s)	869, 1431
MspA1I	CMGCKG	2 cut(s)	1055, 1205
MspI	CCGG	3 cut(s)	216, 228, 923
MspR9I	CCNGG	5 cut(s)	153, 216, 229, 435, 1139
MunI	CAATTG	4 cut(s)	381, 948, 1047, 1287
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	153, 435, 1139
MvnI	CGCG	4 cut(s)	292, 294, 378, 420
MwoI	GCNNNNNNNGC	6 cut(s)	87, 777, 803, 842, 881, 1049
NciI	CCSGG	2 cut(s)	216, 229
NdeI	CATATG	1 cut(s)	1434
NdeII	GATC	4 cut(s)	66, 309, 631, 1306
NlaIV	GGNNCC	2 cut(s)	505, 1369
NmeAIII	GCCGAG	1 cut(s)	1523
NsiI	ATGCAT	2 cut(s)	778, 1448
NspI	RCATGY	4 cut(s)	227, 780, 1130, 1450
PaeI	GCATGC	2 cut(s)	227, 780
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	649
PceI	AGGCCT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	148, 944
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	1112
PfoI	TCCNGGA	2 cut(s)	433, 1137
PkrI	GCNGC	6 cut(s)	250, 1025, 1054, 1057, 1079, 1207
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	644
Psp6I	CCWGG	3 cut(s)	151, 433, 1137
PspGI	CCWGG	3 cut(s)	151, 433, 1137
PspN4I	GGNNCC	2 cut(s)	505, 1369
PspPI	GGNCC	2 cut(s)	431, 1103
PspXI	VCTCGAGB	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	3 cut(s)	833, 848, 1083
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	2 cut(s)	1055, 1205
RsaI	GTAC	3 cut(s)	577, 970, 1006
RsaNI	GTAC	3 cut(s)	576, 969, 1005
SaqAI	TTAA	1 cut(s)	1467
SatI	GCNGC	6 cut(s)	249, 1024, 1053, 1056, 1078, 1206
Sau3AI	GATC	4 cut(s)	66, 309, 631, 1306
Sau96I	GGNCC	2 cut(s)	431, 1103
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	5 cut(s)	153, 216, 229, 435, 1139
SduI	GDGCHC	3 cut(s)	264, 335, 1327
SfcI	CTRYAG	1 cut(s)	849
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	98, 955, 1117
SmoI	CTYRAG	3 cut(s)	98, 955, 1117
SphI	GCATGC	2 cut(s)	227, 780
Sse9I	AATT	7 cut(s)	277, 381, 645, 786, 948, 1047, 1287
SseBI	AGGCCT	1 cut(s)	96
SsiI	CCGC	4 cut(s)	294, 376, 508, 682
SspMI	CTAG	4 cut(s)	348, 552, 1247, 1259
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	5 cut(s)	151, 214, 227, 433, 1137
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	6 cut(s)	274, 326, 580, 627, 1034, 1345
TaiI	ACGT	3 cut(s)	60, 577, 1010
TaqI	TCGA	4 cut(s)	60, 99, 264, 1347
TasI	AATT	7 cut(s)	277, 381, 645, 786, 948, 1047, 1287
TfiI	GAWTC	2 cut(s)	148, 944
Tru1I	TTAA	1 cut(s)	1467
Tru9I	TTAA	1 cut(s)	1467
TscAI	CASTG	2 cut(s)	767, 1024
TseI	GCWGC	6 cut(s)	248, 1023, 1052, 1055, 1077, 1205
TspDTI	ATGAA	9 cut(s)	161, 638, 753, 881, 957, 1266, 1278, 1365, 1368
TspRI	CASTG	2 cut(s)	767, 1024
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	1112
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	786
XbaI	TCTAGA	2 cut(s)	1246, 1258
XceI	RCATGY	4 cut(s)	227, 780, 1130, 1450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1333
XspI	CTAG	4 cut(s)	348, 552, 1247, 1259
Zsp2I	ATGCAT	2 cut(s)	778, 1448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.