Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002680

Physical Location & Seq

Genomic Coordinates Forward (+)

8873232 .. 8877784

Gene Structure 4553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAAAGGTTTATCTGACGCCAGAGTTGATGAGATTTGTGAAGCTGCCGAGAAGATAGTGATTGTTTCTCGTGTGGAAAGAAAAAAGAATAGAAGGATGGGGTCGTCTTCCTCCCAGAAACTCGAAGTCAATAACCGTTTTCCTCTGCGTTTTTACTTTCGGATGGCTAATATAATTCTCAGACAGGCTGACATATATCGGGAAGAGAAAGATATTTTTTACCTGTACATTACGCTCCTAAGGTTTGCAAGTTTGGTCTCCGAGACAATACCGGATCATCAAGACTATATAAAGGCTGATCAAAGAGAAAGATCCTCTCAGAAGGAAGTGAAAAAGAAATTGTTGAATGCTCTTGCTGAGCTAGAGGAGTTAAAACCAGCAGTTAAACAGAAGACCAATGAGATAAACAGAGGAAATGCATATCAAAACAGCAGGCATGATCACCAAACTGGGGAAAGTATACCTCGTAGATCTGATAAAAAGAAAGTAGAAAGTGTGGGGACTTGTAGCTCCAGTACTGGTGGAGAGAATTTATCCCCGCACCCAACACCAGAGTTTCCCTTTGGTCTCCCTGGTAACAAGAGATTAAAGAAAGAGACACGAACAAAAATTTTACTTGAAGAGGCACATGATTGGAAGCTTACCACTCCATGCAAGCCAATACCACAGGCGCGTCCTGCAATTAACCAGCCAACTGCACCACGAGTTGAAGAAGATTTAGAGCTGGTCAAGGCTATTGATGCCTCCTTCCAGTCTGCTTTGCAGGAGAGGCCGCCCTTGTCTGATGCACTCCAAATCCATGAAACAAATGCATCAAGTAGTTCGAGTACCTCCATGGATAGTGGAGACTTGTCACAGTGTGAAAGTGTCCCAGGAGGGGATTCAGATTCACATGCAGAGATCCATGTAATCTCTACCATTCAAACATCTACTACCTCAGAATCAATCCCATCAGCTCCACCAGTTTCAGATGATTGTCTAAATGATCCTTTTCAGTGTCGATCAACTGATTCCAGTCCTATCCAGGAAGGTGAAAATGCTTCTTCTTCATGCGTGATATGTATGGATGCTCCAGTTGAAGGAGCTTTTATCCCATGTGGGCATATGGCTGGATGCATGGCTTGTTTGAATGACATTAAAGATAAGAACTGGGATTGCCCTGTCTGCCGCGTTAAGGTCGATCAGGTCATAAAGCTCTATGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

402

Amino Acids

44.7

Weight (kDa)

5.93

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP8_dimer	PF08969	37 - 127	3.8e-11	USP8 dimerisation domain
zf-C3HC4_3	PF13920	349 - 396	3.1e-14	Zinc finger, C3HC4 type (RING finger)
Prok-RING_4	PF14447	351 - 395	9.4e-06	Prokaryotic RING finger family 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23280 AT3G23280 AT4G14365
fragaria_vesca	FvH4_4g03720 FvH4_4g03720 FvH4_4g03730
malus_domestica	MD05G1075400.v1.1 MD13G1214800.v1.1 MD16G1219900.v1.1
prunus_persica	Prupe.1G040200_v2.0.a1 Prupe.1G040200_v2.0.a1
pyrus_communis	pycom13g18820 pycom16g18320
rosa_chinensis	RchiOBHm_Chr4g0393331 RchiOBHm_Chr4g0393371
rosa_laevigata	RLG00000009750 RLG00000009758 RLG00000009759 RLG00000009763
rosa_multiflora	Rmu_sc0008931.1_g000009
rosa_roxburghii	Rroxscaffold_3G00224380 Rroxscaffold_5G00338320 Rroxscaffold_5G00338340 Rroxscaffold_5G00338360 Rroxscaffold_5G00338390
rosa_rugosa	Rorug04G0001300 Rorug04G0001500 Rorug04G0001800
rosa_samantha	Rh4AG046800 Rh4AG047000 Rh4AG047300 Rh4AG047400 Rh4BG042400 Rh4BG042600 Rh4CG049900 Rh4CG050000 Rh4DG044200 Rh5AG327600
rosa_wichuraiana	Rw4G003700 Rw4G003720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	2 cut(s)	673, 1170
AciI	CCGC	3 cut(s)	539, 773, 1168
AclWI	GGATC	4 cut(s)	282, 306, 895, 980
AcsI	RAATTY	2 cut(s)	529, 609
AcyI	GRCGYC	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	860
AfaI	GTAC	3 cut(s)	227, 517, 829
AfiI	CCNNNNNNNGG	4 cut(s)	451, 877, 1079, 1174
AgsI	TTSAA	6 cut(s)	346, 620, 710, 923, 1079, 1129
AjnI	CCWGG	3 cut(s)	571, 871, 1023
AluBI	AGCT	8 cut(s)	44, 361, 510, 640, 724, 956, 1085, 1195
AluI	AGCT	8 cut(s)	44, 361, 510, 640, 724, 956, 1085, 1195
Alw26I	GTCTC	5 cut(s)	257, 262, 572, 590, 840
AlwI	GGATC	4 cut(s)	282, 306, 895, 980
AoxI	GGCC	1 cut(s)	770
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	529, 609
AspLEI	GCGC	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	434, 1043
AxyI	CCTNAGG	1 cut(s)	239
BauI	CACGAG	2 cut(s)	69, 702
BbsI	GAAGAC	2 cut(s)	99, 398
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	3 cut(s)	91, 157, 958
BciT130I	CCWGG	3 cut(s)	573, 873, 1025
BclI	TGATCA	2 cut(s)	298, 439
BcoDI	GTCTC	5 cut(s)	257, 262, 572, 590, 840
BfaI	CTAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	3 cut(s)	45, 773, 1168
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	3 cut(s)	46, 774, 1169
BmcAI	AGTACT	1 cut(s)	517
Bme1390I	CCNGG	3 cut(s)	573, 873, 1025
BmrFI	CCNGG	3 cut(s)	573, 873, 1025
BmrI	ACTGGG	2 cut(s)	459, 1159
BmsI	GCATC	5 cut(s)	730, 775, 821, 1057, 1103
BmuI	ACTGGG	2 cut(s)	459, 1159
BpiI	GAAGAC	2 cut(s)	99, 398
BpmI	CTGGAG	2 cut(s)	496, 1056
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	262, 572
BsaJI	CCNNGG	3 cut(s)	571, 834, 871
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	4 cut(s)	451, 877, 1079, 1174
Bse1I	ACTGG	8 cut(s)	454, 513, 523, 751, 962, 1014, 1073, 1154
Bse21I	CCTNAGG	1 cut(s)	239
BseBI	CCWGG	3 cut(s)	573, 873, 1025
BseDI	CCNNGG	3 cut(s)	571, 834, 871
BseGI	GGATG	4 cut(s)	102, 168, 1072, 1118
BseLI	CCNNNNNNNGG	4 cut(s)	451, 877, 1079, 1174
BseMII	CTCAG	4 cut(s)	193, 332, 348, 951
BseNI	ACTGG	8 cut(s)	454, 513, 523, 751, 962, 1014, 1073, 1154
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	681
Bsh1236I	CGCG	2 cut(s)	673, 1170
BshFI	GGCC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	514, 854
BslI	CCNNNNNNNGG	4 cut(s)	451, 877, 1079, 1174
BsmAI	GTCTC	5 cut(s)	257, 262, 572, 590, 840
BsmFI	GGGAC	2 cut(s)	514, 854
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	772
Bso31I	GGTCTC	2 cut(s)	262, 572
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	3 cut(s)	539, 773, 1168
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	4 cut(s)	192, 331, 349, 950
BspFNI	CGCG	2 cut(s)	673, 1170
BspPI	GGATC	4 cut(s)	282, 306, 895, 980
BspTNI	GGTCTC	2 cut(s)	262, 572
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	8 cut(s)	454, 513, 523, 751, 962, 1014, 1073, 1154
BssECI	CCNNGG	3 cut(s)	571, 834, 871
BssMI	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
BssNAI	GTATAC	1 cut(s)	461
BssNI	GRCGYC	1 cut(s)	18
BssSI	CACGAG	2 cut(s)	69, 702
BssT1I	CCWWGG	1 cut(s)	834
Bst1107I	GTATAC	1 cut(s)	461
Bst2BI	CACGAG	2 cut(s)	69, 702
Bst2UI	CCWGG	3 cut(s)	573, 873, 1025
Bst4CI	ACNGT	2 cut(s)	137, 858
Bst6I	CTCTTC	2 cut(s)	198, 615
BstACI	GRCGYC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	434, 656
BstDEI	CTNAG	5 cut(s)	179, 239, 318, 357, 937
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	4 cut(s)	102, 168, 1072, 1118
BstFNI	CGCG	2 cut(s)	673, 1170
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	9 cut(s)	277, 301, 314, 442, 473, 903, 988, 1004, 1183
BstMAI	GTCTC	5 cut(s)	257, 262, 572, 590, 840
BstMBI	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
BstMWI	GCNNNNNNNGC	4 cut(s)	677, 740, 769, 1164
BstNI	CCWGG	3 cut(s)	573, 873, 1025
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	3 cut(s)	571, 871, 1023
BstUI	CGCG	2 cut(s)	673, 1170
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	99, 398
BstX2I	RGATCY	3 cut(s)	311, 470, 900
BstYI	RGATCY	3 cut(s)	311, 470, 900
BstZ17I	GTATAC	1 cut(s)	461
Bsu36I	CCTNAGG	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	772
BtgI	CCRYGG	1 cut(s)	834
BtsCI	GGATG	4 cut(s)	102, 168, 1072, 1118
BtsIMutI	CAGTG	2 cut(s)	863, 1001
Cac8I	GCNNGC	2 cut(s)	434, 656
CfoI	GCGC	1 cut(s)	673
CseI	GACGC	2 cut(s)	26, 662
Csp6I	GTAC	3 cut(s)	226, 516, 828
CviQI	GTAC	3 cut(s)	226, 516, 828
DdeI	CTNAG	5 cut(s)	179, 239, 318, 357, 937
DpnI	GATC	9 cut(s)	276, 300, 313, 441, 472, 902, 987, 1003, 1182
DpnII	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
DraIII	CACNNNGTG	1 cut(s)	860
Eam1104I	CTCTTC	2 cut(s)	198, 615
EarI	CTCTTC	2 cut(s)	198, 615
Eco130I	CCWWGG	1 cut(s)	834
Eco31I	GGTCTC	2 cut(s)	262, 572
Eco81I	CCTNAGG	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	571, 871, 1023
EcoT14I	CCWWGG	1 cut(s)	834
EcoT22I	ATGCAT	3 cut(s)	421, 814, 1118
ErhI	CCWWGG	1 cut(s)	834
FaqI	GGGAC	2 cut(s)	514, 854
FauI	CCCGC	1 cut(s)	546
FauNDI	CATATG	1 cut(s)	1104
FbaI	TGATCA	2 cut(s)	298, 439
FblI	GTMKAC	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	45, 773, 1168
FokI	GGATG	4 cut(s)	109, 175, 1079, 1125
Fsp4HI	GCNGC	3 cut(s)	45, 773, 1168
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	3 cut(s)	45, 773, 1168
GsuI	CTGGAG	2 cut(s)	496, 1056
HaeIII	GGCC	1 cut(s)	772
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	2 cut(s)	26, 662
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	4 cut(s)	881, 887, 941, 1010
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	434, 1043
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188III	TCNNGA	2 cut(s)	200, 281
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	5 cut(s)	87, 316, 757, 1022, 1073
HpyCH4III	ACNGT	2 cut(s)	137, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	677, 740, 769, 1164
HpyF3I	CTNAG	5 cut(s)	179, 239, 318, 357, 937
Hsp92I	GRCGYC	1 cut(s)	18
HspAI	GCGC	1 cut(s)	671
Ksp22I	TGATCA	2 cut(s)	298, 439
Kzo9I	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
LmnI	GCTCC	5 cut(s)	240, 515, 961, 1075, 1082
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	5 cut(s)	730, 775, 821, 1057, 1103
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	2 cut(s)	575, 852
MalI	GATC	9 cut(s)	276, 300, 313, 441, 472, 902, 987, 1003, 1182
MboI	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
MboII	GAAGA	9 cut(s)	64, 99, 215, 403, 632, 722, 725, 1035, 1038
MflI	RGATCY	3 cut(s)	311, 470, 900
MluCI	AATT	5 cut(s)	174, 338, 529, 609, 681
Mph1103I	ATGCAT	3 cut(s)	421, 814, 1118
MseI	TTAA	6 cut(s)	371, 384, 587, 684, 1137, 1173
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	573, 873, 1025
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	3 cut(s)	573, 873, 1025
MvnI	CGCG	2 cut(s)	673, 1170
MwoI	GCNNNNNNNGC	4 cut(s)	677, 740, 769, 1164
NcoI	CCATGG	1 cut(s)	834
NdeI	CATATG	1 cut(s)	1104
NdeII	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	852
NsiI	ATGCAT	3 cut(s)	421, 814, 1118
NspI	RCATGY	1 cut(s)	896
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	4 cut(s)	881, 887, 941, 1010
PfoI	TCCNGGA	1 cut(s)	1023
PkrI	GCNGC	3 cut(s)	46, 774, 1169
Psp6I	CCWGG	3 cut(s)	571, 871, 1023
PspGI	CCWGG	3 cut(s)	571, 871, 1023
PsuI	RGATCY	3 cut(s)	311, 470, 900
RsaI	GTAC	3 cut(s)	227, 517, 829
RsaNI	GTAC	3 cut(s)	226, 516, 828
SaqAI	TTAA	6 cut(s)	371, 384, 587, 684, 1137, 1173
SatI	GCNGC	3 cut(s)	45, 773, 1168
Sau3AI	GATC	9 cut(s)	274, 298, 311, 439, 470, 900, 985, 1001, 1180
ScaI	AGTACT	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	573, 873, 1025
SfaNI	GCATC	5 cut(s)	730, 775, 821, 1057, 1103
Sse9I	AATT	5 cut(s)	174, 338, 529, 609, 681
SsiI	CCGC	3 cut(s)	539, 773, 1168
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	3 cut(s)	571, 871, 1023
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	2 cut(s)	137, 858
TaqI	TCGA	4 cut(s)	123, 824, 1000, 1179
TasI	AATT	5 cut(s)	174, 338, 529, 609, 681
TatI	WGTACW	2 cut(s)	225, 515
TauI	GCSGC	2 cut(s)	775, 1170
TfiI	GAWTC	4 cut(s)	881, 887, 941, 1010
Tru1I	TTAA	6 cut(s)	371, 384, 587, 684, 1137, 1173
Tru9I	TTAA	6 cut(s)	371, 384, 587, 684, 1137, 1173
TscAI	CASTG	2 cut(s)	863, 1001
TseFI	GTSAC	1 cut(s)	852
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	852
TspDTI	ATGAA	3 cut(s)	17, 816, 1038
TspRI	CASTG	2 cut(s)	863, 1001
XapI	RAATTY	2 cut(s)	529, 609
XceI	RCATGY	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	517
Zsp2I	ATGCAT	3 cut(s)	421, 814, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.