Rw4G003720

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
7252814 .. 7257276
4463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003720.1

Sequence Viewer

Length: 1332 bp
ATGGGTCAGCCGGCGCCTCGTCCCCAAGCCGCTGTTCCTGAGGCGGCCGTTCCTGAAGCGGTCGGTGCCGAGGACTTGTCGGCGGCCGCGGCGGCGGAGGACGACGAGGAGCCCGCACCGCTCTCGGGTGGCTTGTGCCCTCTTCGCCTTCTCGCTTTGACGCTGTTGATAGTGATTGTTTCTCGTGTGGAAAGAAAAAAGAATAGAAGGATGGGATCGTGTTTCTCCCAGAAACTCGAAGTCGATAACCGTTTTCCTCTGCGTTTTTACTTTCGGATGGCTGATATAATTCTCAGACAGGCTGACATATATCGGGAAGAGAAAGATATTTTTTACCTGTACATTACGCTCCTAAGGTTTGCAAGTTTGGTCTCCGAGACAATACCGGATCATCAAGACTATATAAAGGCTGATCAAAGAGAAAGTCAGAAGGAAGTGAAAAATAAATTGTTGAATGCTCTTGCTGAGCTAGAGGAGTTAAAACCAGCAGTTAAACAGAAGATCAATGAGATAAACAGAGGAAATGCATATCAAAACAGCAGGCATGATCACCAAACTGGGGAAAGTATACCTCGTAGATCTGATAAAAAGAAAGTAGAAAGTGTGGGGACTTGTAGCTCCAGTACTGGTGGAGAGAATTTATCCCCACACCCAACACCAGAGTTTCCCTTTGGTCTCCCTGGTAACAAGAGATTAAAGAAAGAGACACGAACAAAAATTTTACTTGAAAAGGCACATGATTGGAAGCTTACCACTCCATGCAAGCCAATACCACAGGCGCGTCCTGCAATTAACCAGCCAACTGCACCACCAGTTGAAGAAGATTTAGAGCTGGTCAAGGCTATTGATGCCTCCATCCAGTCTGCTTTGCAGGAGAGGCCGCCTTTGTCTGATGCACTCCGAATCCATGAAACAAATGCATCAAGTAGTTCGAGTACCTCCATGGATAGTGGAGACTTGTCACAGTGTGAAAGTGTCCTAGGAGGGGATTCAGATTTACATGCAGAGATCCATGTAATCTCTACCATTCAAACATCTACTACCTCAGAATCAATCCCATCATCTCCAACCCCATCAGCTCCACCAGTTTCAGATGATTGTCTAAATGATCCTTTTCAGTGTCGATCAACTGATTCCAGTCCTATCCAGGAAGGTGAAAATGCTTCTTCTTCATGCGTGATATGTATGGATGCTCCAGTTGAAGGAGCTTTTATCCCATGTGGGCATATGGCTGGATGCATGGCTTGTTTGAATGACATTAAAGATAAGAACTGGGATTGCCCTGTCTGCCGCGTTAAGGTCGATCAGGTCATAAAGCTCTATGTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

48.55

Weight (kDa)

5.31

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
USP8_dimer PF08969 76 - 166 1.4e-11 USP8 dimerisation domain
zf-C3HC4_3 PF13920 390 - 437 3.6e-14 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 65
AccBSI CCGCTC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 568
AccII CGCG 3 cut(s) 89, 781, 1293
AclWI GGATC 4 cut(s) 223, 396, 1003, 1103
AcoI YGGCCR 2 cut(s) 45, 84
AcsI RAATTY 2 cut(s) 637, 717
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 968
AfaI GTAC 3 cut(s) 341, 625, 937
AfiI CCNNNNNNNGG 5 cut(s) 125, 559, 985, 1202, 1297
AgsI TTSAA 6 cut(s) 454, 728, 818, 1031, 1202, 1252
AjnI CCWGG 2 cut(s) 679, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AluBI AGCT 7 cut(s) 469, 618, 748, 832, 1079, 1208, 1318
AluI AGCT 7 cut(s) 469, 618, 748, 832, 1079, 1208, 1318
Alw26I GTCTC 5 cut(s) 371, 376, 680, 698, 948
AlwI GGATC 4 cut(s) 223, 396, 1003, 1103
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 3 cut(s) 45, 84, 878
ApoI RAATTY 2 cut(s) 637, 717
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspA2I CCTAGG 1 cut(s) 979
AspLEI GCGC 2 cut(s) 16, 781
AsuHPI GGTGA 2 cut(s) 542, 1166
AvaI CYCGRG 1 cut(s) 124
AvrII CCTAGG 1 cut(s) 979
AxyI CCTNAGG 2 cut(s) 39, 353
BaeGI GKGCMC 1 cut(s) 140
BanI GGYRCC 2 cut(s) 13, 65
BanII GRGCYC 1 cut(s) 114
BauI CACGAG 1 cut(s) 183
BccI CCATC 5 cut(s) 205, 271, 863, 1066, 1081
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 105, 139
BciT130I CCWGG 2 cut(s) 681, 1148
BclI TGATCA 2 cut(s) 412, 547
BcoDI GTCTC 5 cut(s) 371, 376, 680, 698, 948
BfaI CTAG 2 cut(s) 470, 980
BfoI RGCGCY 1 cut(s) 17
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 578
BisI GCNGC 8 cut(s) 30, 45, 84, 87, 90, 93, 881, 1291
BlnI CCTAGG 1 cut(s) 979
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 8 cut(s) 31, 46, 85, 88, 91, 94, 882, 1292
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 681, 1148
BmeT110I CYCGRG 1 cut(s) 124
BmiI GGNNCC 3 cut(s) 15, 67, 111
BmrFI CCNGG 2 cut(s) 681, 1148
BmrI ACTGGG 2 cut(s) 567, 1282
BmsI GCATC 5 cut(s) 838, 883, 929, 1180, 1226
BmuI ACTGGG 2 cut(s) 567, 1282
BpmI CTGGAG 2 cut(s) 604, 1179
Bpu1102I GCTNAGC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 2 cut(s) 376, 680
BsaJI CCNNGG 5 cut(s) 69, 87, 679, 942, 979
BsaWI WCCGGW 1 cut(s) 385
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 559, 985, 1202, 1297
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 9 cut(s) 562, 621, 631, 812, 859, 1085, 1137, 1196, 1277
Bse21I CCTNAGG 2 cut(s) 39, 353
BseBI CCWGG 2 cut(s) 681, 1148
BseDI CCNNGG 5 cut(s) 69, 87, 679, 942, 979
BseGI GGATG 5 cut(s) 216, 282, 855, 1195, 1241
BseLI CCNNNNNNNGG 5 cut(s) 125, 559, 985, 1202, 1297
BseMII CTCAG 4 cut(s) 30, 307, 456, 1059
BseNI ACTGG 9 cut(s) 562, 621, 631, 812, 859, 1085, 1137, 1196, 1277
BseRI GAGGAG 2 cut(s) 122, 488
BseSI GKGCMC 1 cut(s) 140
BseX3I CGGCCG 2 cut(s) 45, 84
BsgI GTGCAG 1 cut(s) 789
Bsh1236I CGCG 3 cut(s) 89, 781, 1293
Bsh1285I CGRYCG 3 cut(s) 48, 63, 87
BshFI GGCC 3 cut(s) 47, 86, 880
BshNI GGYRCC 2 cut(s) 13, 65
BsiEI CGRYCG 3 cut(s) 48, 63, 87
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 2 cut(s) 11, 386
BslFI GGGAC 2 cut(s) 6, 622
BslI CCNNNNNNNGG 5 cut(s) 125, 559, 985, 1202, 1297
BsmAI GTCTC 5 cut(s) 371, 376, 680, 698, 948
BsmFI GGGAC 2 cut(s) 6, 622
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 3 cut(s) 47, 86, 880
Bso31I GGTCTC 2 cut(s) 376, 680
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 114, 140
Bsp1407I TGTACA 1 cut(s) 339
Bsp1720I GCTNAGC 1 cut(s) 465
Bsp19I CCATGG 1 cut(s) 942
BspANI GGCC 3 cut(s) 47, 86, 880
BspCNI CTCAG 4 cut(s) 31, 306, 457, 1058
BspFNI CGCG 3 cut(s) 89, 781, 1293
BspLI GGNNCC 3 cut(s) 15, 67, 111
BspPI GGATC 4 cut(s) 223, 396, 1003, 1103
BspT107I GGYRCC 2 cut(s) 13, 65
BspTNI GGTCTC 2 cut(s) 376, 680
BsrBI CCGCTC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 10
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 9 cut(s) 562, 621, 631, 812, 859, 1085, 1137, 1196, 1277
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 5 cut(s) 69, 87, 679, 942, 979
BssNAI GTATAC 1 cut(s) 569
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 942, 979
Bst1107I GTATAC 1 cut(s) 569
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 681, 1148
Bst4CI ACNGT 2 cut(s) 251, 966
Bst6I CTCTTC 2 cut(s) 147, 312
BstACI GRCGYC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 4 cut(s) 12, 114, 542, 764
BstDEI CTNAG 5 cut(s) 39, 293, 353, 465, 1045
BstDSI CCRYGG 2 cut(s) 87, 942
BstF5I GGATG 5 cut(s) 216, 282, 855, 1195, 1241
BstFNI CGCG 3 cut(s) 89, 781, 1293
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 2 cut(s) 16, 781
BstMAI GTCTC 5 cut(s) 371, 376, 680, 698, 948
BstMCI CGRYCG 3 cut(s) 48, 63, 87
BstMWI GCNNNNNNNGC 9 cut(s) 65, 89, 92, 118, 144, 785, 848, 877, 1287
BstNI CCWGG 2 cut(s) 681, 1148
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 2 cut(s) 679, 1146
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 3 cut(s) 89, 781, 1293
BstX2I RGATCY 2 cut(s) 578, 1008
BstYI RGATCY 2 cut(s) 578, 1008
BstZ17I GTATAC 1 cut(s) 569
BstZI CGGCCG 2 cut(s) 45, 84
Bsu36I CCTNAGG 2 cut(s) 39, 353
BsuRI GGCC 3 cut(s) 47, 86, 880
BtgI CCRYGG 2 cut(s) 87, 942
BtsCI GGATG 5 cut(s) 216, 282, 855, 1195, 1241
BtsIMutI CAGTG 2 cut(s) 971, 1124
Cac8I GCNNGC 4 cut(s) 12, 114, 542, 764
CciNI GCGGCCGC 1 cut(s) 84
CfoI GCGC 2 cut(s) 16, 781
Cfr10I RCCGGY 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 2 cut(s) 169, 770
Csp6I GTAC 3 cut(s) 340, 624, 936
CviQI GTAC 3 cut(s) 340, 624, 936
DdeI CTNAG 5 cut(s) 39, 293, 353, 465, 1045
DinI GGCGCC 1 cut(s) 15
DraIII CACNNNGTG 1 cut(s) 968
EaeI YGGCCR 2 cut(s) 45, 84
EagI CGGCCG 2 cut(s) 45, 84
Eam1104I CTCTTC 2 cut(s) 147, 312
EarI CTCTTC 2 cut(s) 147, 312
EciI GGCGGA 1 cut(s) 110
EclXI CGGCCG 2 cut(s) 45, 84
Eco130I CCWWGG 2 cut(s) 942, 979
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 2 cut(s) 376, 680
Eco52I CGGCCG 2 cut(s) 45, 84
Eco57I CTGAAG 1 cut(s) 75
Eco81I CCTNAGG 2 cut(s) 39, 353
Eco88I CYCGRG 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 679, 1146
EcoT14I CCWWGG 2 cut(s) 942, 979
EcoT22I ATGCAT 3 cut(s) 529, 922, 1241
EcoT38I GRGCYC 1 cut(s) 114
EgeI GGCGCC 1 cut(s) 15
EheI GGCGCC 1 cut(s) 15
ErhI CCWWGG 2 cut(s) 942, 979
FaqI GGGAC 2 cut(s) 6, 622
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 1227
FbaI TGATCA 2 cut(s) 412, 547
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 8 cut(s) 30, 45, 84, 87, 90, 93, 881, 1291
FokI GGATG 5 cut(s) 223, 289, 842, 1202, 1248
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 8 cut(s) 30, 45, 84, 87, 90, 93, 881, 1291
FspBI CTAG 2 cut(s) 470, 980
GlaI GCGC 2 cut(s) 15, 780
GluI GCNGC 8 cut(s) 30, 45, 84, 87, 90, 93, 881, 1291
GsuI CTGGAG 2 cut(s) 604, 1179
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 3 cut(s) 47, 86, 880
HapII CCGG 2 cut(s) 11, 386
HgaI GACGC 2 cut(s) 169, 770
HhaI GCGC 2 cut(s) 16, 781
Hin1I GRCGYC 1 cut(s) 14
Hin6I GCGC 2 cut(s) 14, 779
HinP1I GCGC 2 cut(s) 14, 779
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 4 cut(s) 903, 989, 1049, 1133
HpaII CCGG 2 cut(s) 11, 386
HphI GGTGA 2 cut(s) 542, 1166
Hpy166II GTNNAC 1 cut(s) 569
Hpy188III TCNNGA 4 cut(s) 38, 53, 314, 395
Hpy8I GTNNAC 1 cut(s) 569
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 5 cut(s) 158, 201, 424, 1145, 1196
HpyCH4III ACNGT 2 cut(s) 251, 966
HpyF10VI GCNNNNNNNGC 9 cut(s) 65, 89, 92, 118, 144, 785, 848, 877, 1287
HpyF3I CTNAG 5 cut(s) 39, 293, 353, 465, 1045
Hsp92I GRCGYC 1 cut(s) 14
HspAI GCGC 2 cut(s) 14, 779
KasI GGCGCC 1 cut(s) 13
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Ksp22I TGATCA 2 cut(s) 412, 547
KspI CCGCGG 1 cut(s) 90
LmnI GCTCC 6 cut(s) 109, 354, 623, 1084, 1198, 1205
LweI GCATC 5 cut(s) 838, 883, 929, 1180, 1226
MaeI CTAG 2 cut(s) 470, 980
MaeIII GTNAC 2 cut(s) 683, 960
MbiI CCGCTC 1 cut(s) 121
MboII GAAGA 7 cut(s) 134, 329, 511, 830, 833, 1158, 1161
MflI RGATCY 2 cut(s) 578, 1008
MhlI GDGCHC 2 cut(s) 114, 140
MluCI AATT 5 cut(s) 288, 446, 637, 717, 789
Mly113I GGCGCC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 1091
Mph1103I ATGCAT 3 cut(s) 529, 922, 1241
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 6 cut(s) 479, 492, 695, 792, 1260, 1296
MspA1I CMGCKG 2 cut(s) 32, 89
MspI CCGG 2 cut(s) 11, 386
MspR9I CCNGG 2 cut(s) 681, 1148
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 2 cut(s) 681, 1148
MvnI CGCG 3 cut(s) 89, 781, 1293
MwoI GCNNNNNNNGC 9 cut(s) 65, 89, 92, 118, 144, 785, 848, 877, 1287
NaeI GCCGGC 1 cut(s) 12
NarI GGCGCC 1 cut(s) 14
NcoI CCATGG 1 cut(s) 942
NdeI CATATG 1 cut(s) 1227
NgoMIV GCCGGC 1 cut(s) 10
NlaIV GGNNCC 3 cut(s) 15, 67, 111
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 960
NotI GCGGCCGC 1 cut(s) 84
NsiI ATGCAT 3 cut(s) 529, 922, 1241
NspI RCATGY 1 cut(s) 1004
PctI GAATGC 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 12
PfeI GAWTC 4 cut(s) 903, 989, 1049, 1133
PfoI TCCNGGA 1 cut(s) 1146
PkrI GCNGC 8 cut(s) 31, 46, 85, 88, 91, 94, 882, 1292
PluTI GGCGCC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 679, 1146
PspGI CCWGG 2 cut(s) 679, 1146
PspN4I GGNNCC 3 cut(s) 15, 67, 111
PsuI RGATCY 2 cut(s) 578, 1008
RsaI GTAC 3 cut(s) 341, 625, 937
RsaNI GTAC 3 cut(s) 340, 624, 936
SacII CCGCGG 1 cut(s) 90
SaqAI TTAA 6 cut(s) 479, 492, 695, 792, 1260, 1296
SatI GCNGC 8 cut(s) 30, 45, 84, 87, 90, 93, 881, 1291
ScaI AGTACT 1 cut(s) 625
ScrFI CCNGG 2 cut(s) 681, 1148
SduI GDGCHC 2 cut(s) 114, 140
SfaNI GCATC 5 cut(s) 838, 883, 929, 1180, 1226
SfoI GGCGCC 1 cut(s) 15
Sfr303I CCGCGG 1 cut(s) 90
SgrBI CCGCGG 1 cut(s) 90
Sse9I AATT 5 cut(s) 288, 446, 637, 717, 789
SspDI GGCGCC 1 cut(s) 13
SspMI CTAG 2 cut(s) 470, 980
StyD4I CCNGG 2 cut(s) 679, 1146
StyI CCWWGG 2 cut(s) 942, 979
TaaI ACNGT 2 cut(s) 251, 966
TaqI TCGA 5 cut(s) 237, 243, 932, 1123, 1302
TasI AATT 5 cut(s) 288, 446, 637, 717, 789
TatI WGTACW 2 cut(s) 339, 623
TauI GCSGC 8 cut(s) 32, 47, 86, 89, 92, 95, 883, 1293
TfiI GAWTC 4 cut(s) 903, 989, 1049, 1133
Tru1I TTAA 6 cut(s) 479, 492, 695, 792, 1260, 1296
Tru9I TTAA 6 cut(s) 479, 492, 695, 792, 1260, 1296
TscAI CASTG 2 cut(s) 971, 1124
TseFI GTSAC 1 cut(s) 960
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 2 cut(s) 924, 1161
TspRI CASTG 2 cut(s) 971, 1124
XapI RAATTY 2 cut(s) 637, 717
XceI RCATGY 1 cut(s) 1004
XmaJI CCTAGG 1 cut(s) 979
XmiI GTMKAC 1 cut(s) 568
XspI CTAG 2 cut(s) 470, 980
ZrmI AGTACT 1 cut(s) 625
Zsp2I ATGCAT 3 cut(s) 529, 922, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.