AT4G16024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004342
Physical Location & Seq
Reverse (-)
9080840 .. 9081245
406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16024.1

Sequence Viewer

Length: 285 bp
ATGGCTCAAAATGATAGGAATACAAGAATTGCCCAAAAGGCTTTTGAAATAGTCGATAACATGTATGATATTACTGCTCGCCGAGTCATTTCTCAGTTTTCATATGAGTCAACTATTGTAAAACCGGTGGTTTATCATCCCACGGATCGTATTCAATACTTCAGTGGTGCTCGTCCTTTTATTGGCCATGTTGACCGCTTTGAGAGGCCACAAGAACGGGCTATTAACTGCGATAAGGCGGTTCAGCTCTATGGAGGGGTTCTTATAAAGGAATTTCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.01

Weight (kDa)

9.25

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
AciI CCGC 2 cut(s) 196, 239
AclWI GGATC 1 cut(s) 153
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 60
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 2 cut(s) 47, 155
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw21I GWGCWC 1 cut(s) 172
AlwI GGATC 1 cut(s) 153
AoxI GGCC 2 cut(s) 184, 206
ApoI RAATTY 1 cut(s) 272
AsiGI ACCGGT 1 cut(s) 124
BalI TGGCCA 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 172
BglI GCCNNNNNGGC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 107
BshFI GGCC 2 cut(s) 186, 208
BshTI ACCGGT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 182
BsnI GGCC 2 cut(s) 186, 208
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 2 cut(s) 196, 239
BspANI GGCC 2 cut(s) 186, 208
BspCNI CTCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 64
BsuRI GGCC 2 cut(s) 186, 208
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 124
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 2 cut(s) 61, 188
CviJI RGCY 6 cut(s) 5, 41, 186, 208, 221, 247
CviKI_1 RGCY 6 cut(s) 5, 41, 186, 208, 221, 247
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 145
FaeI CATG 2 cut(s) 64, 191
FaiI YATR 7 cut(s) 62, 66, 103, 105, 189, 252, 266
FatI CATG 2 cut(s) 60, 187
FauNDI CATATG 1 cut(s) 103
FokI GGATG 1 cut(s) 123
HaeIII GGCC 2 cut(s) 186, 208
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 64, 191
HincII GTYRAC 2 cut(s) 111, 193
HindII GTYRAC 2 cut(s) 111, 193
HinfI GANTC 2 cut(s) 84, 107
HpaII CCGG 1 cut(s) 125
Hpy166II GTNNAC 2 cut(s) 111, 193
Hpy8I GTNNAC 2 cut(s) 111, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 64, 191
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 1 cut(s) 138
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 3 cut(s) 27, 272, 280
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 2 cut(s) 93, 116
MnlI CCTC 2 cut(s) 198, 248
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 2 cut(s) 225, 283
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeI CATATG 1 cut(s) 103
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 64, 191
NmeAIII GCCGAG 1 cut(s) 107
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PinAI ACCGGT 1 cut(s) 124
PleI GAGTC 2 cut(s) 92, 115
PpsI GAGTC 2 cut(s) 92, 115
PscI ACATGT 1 cut(s) 60
PsiI TTATAA 1 cut(s) 266
SaqAI TTAA 2 cut(s) 225, 283
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 2 cut(s) 93, 116
SduI GDGCHC 1 cut(s) 172
SetI ASST 1 cut(s) 249
Sse9I AATT 3 cut(s) 27, 272, 280
SsiI CCGC 2 cut(s) 196, 239
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 27, 272, 280
Tru1I TTAA 2 cut(s) 225, 283
Tru9I TTAA 2 cut(s) 225, 283
TscAI CASTG 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 169
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.