FvH4_4g18730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004342
Physical Location & Seq
Forward (+)
22572920 .. 22573255
336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18730.t1

Sequence Viewer

Length: 336 bp
ATGGGAAATGCTCAAGGTGTTTCTCCTCAGAACCGGTCTAAACCACGTGCTACTGTCACTCCTCCTCATGGTATCAATCGCCGTCAGGGCAACCCGAATGCGGAGGAGAAAGTCCATGAAGTTCCACGACCACCTAACTACACTCGTCATGGATATGGTAACAATCGCCGTCAGGGCAACCCGAATGCGGAGGAGAAAGTCCATGAAGTTCCAAGCCCCCCGCAGCAGCAGCGGCCCATCAACTGTGACGAGGCAGCGCGACTCTTCGGTGGGACTGTCGTCACTGAATTTGGTACTCCTGCGAATAATAAACCCACTGTACGCTATGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.27

Weight (kDa)

9.88

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 259
AciI CCGC 4 cut(s) 101, 188, 221, 232
AcsI RAATTY 1 cut(s) 287
AcvI CACGTG 1 cut(s) 47
AfaI GTAC 2 cut(s) 295, 321
AfiI CCNNNNNNNGG 3 cut(s) 68, 100, 187
AgeI ACCGGT 1 cut(s) 33
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 223, 226, 229, 254
ApoI RAATTY 1 cut(s) 287
AsiGI ACCGGT 1 cut(s) 33
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 47
BbvI GCAGC 4 cut(s) 235, 238, 241, 266
BccI CCATC 1 cut(s) 245
BceAI ACGGC 2 cut(s) 66, 153
BglI GCCNNNNNGGC 2 cut(s) 87, 174
BisI GCNGC 5 cut(s) 224, 227, 230, 233, 255
BlsI GCNGC 5 cut(s) 225, 228, 231, 234, 256
BmgT120I GGNCC 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 100, 187
Bse118I RCCGGY 1 cut(s) 33
BseLI CCNNNNNNNGG 3 cut(s) 68, 100, 187
BseMII CTCAG 1 cut(s) 41
BseRI GAGGAG 5 cut(s) 15, 51, 54, 119, 206
BseXI GCAGC 4 cut(s) 235, 238, 241, 266
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 33
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 3 cut(s) 68, 100, 187
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 2 cut(s) 103, 190
BsnI GGCC 1 cut(s) 235
BspACI CCGC 4 cut(s) 101, 188, 221, 232
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
Bst4CI ACNGT 4 cut(s) 55, 245, 277, 319
Bst6I CTCTTC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 27
BstFNI CGCG 1 cut(s) 259
BstHHI GCGC 1 cut(s) 259
BstMWI GCNNNNNNNGC 4 cut(s) 87, 174, 229, 232
BstPAI GACNNNNGTC 1 cut(s) 278
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 4 cut(s) 235, 238, 241, 266
BsuRI GGCC 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 282, 315
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 294, 320
CspAI ACCGGT 1 cut(s) 33
CviAII CATG 4 cut(s) 68, 116, 149, 203
CviJI RGCY 2 cut(s) 216, 235
CviKI_1 RGCY 2 cut(s) 216, 235
CviQI GTAC 2 cut(s) 294, 320
DdeI CTNAG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 47
FaeI CATG 4 cut(s) 71, 119, 152, 206
FaiI YATR 6 cut(s) 69, 117, 150, 156, 204, 327
FaqI GGGAC 1 cut(s) 286
FatI CATG 4 cut(s) 67, 115, 148, 202
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 224, 227, 230, 233, 255
Fsp4HI GCNGC 5 cut(s) 224, 227, 230, 233, 255
GlaI GCGC 1 cut(s) 258
GluI GCNGC 5 cut(s) 224, 227, 230, 233, 255
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 259
Hin1II CATG 4 cut(s) 71, 119, 152, 206
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 30
HpyCH4III ACNGT 4 cut(s) 55, 245, 277, 319
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 174, 229, 232
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 4 cut(s) 71, 119, 152, 206
HspAI GCGC 1 cut(s) 257
LpnPI CCDG 4 cut(s) 47, 71, 158, 312
Lsp1109I GCAGC 4 cut(s) 235, 238, 241, 266
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 4 cut(s) 55, 158, 245, 280
MboII GAAGA 1 cut(s) 256
MluCI AATT 1 cut(s) 287
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 6 cut(s) 36, 72, 75, 97, 184, 244
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 34
Mva1269I GAATGC 2 cut(s) 103, 190
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 87, 174, 229, 232
NlaIII CATG 4 cut(s) 71, 119, 152, 206
NmuCI GTSAC 3 cut(s) 55, 245, 280
PctI GAATGC 2 cut(s) 103, 190
PinAI ACCGGT 1 cut(s) 33
PkrI GCNGC 5 cut(s) 225, 228, 231, 234, 256
PleI GAGTC 1 cut(s) 255
PmaCI CACGTG 1 cut(s) 47
PmlI CACGTG 1 cut(s) 47
PpsI GAGTC 1 cut(s) 255
Ppu21I YACGTR 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 278
PspCI CACGTG 1 cut(s) 47
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 2 cut(s) 295, 321
RsaNI GTAC 2 cut(s) 294, 320
RseI CAYNNNNRTG 1 cut(s) 153
SatI GCNGC 5 cut(s) 224, 227, 230, 233, 255
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 255
SetI ASST 3 cut(s) 19, 49, 136
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 287
SsiI CCGC 4 cut(s) 101, 188, 221, 232
TaaI ACNGT 4 cut(s) 55, 245, 277, 319
TaiI ACGT 1 cut(s) 49
TasI AATT 1 cut(s) 287
TauI GCSGC 1 cut(s) 235
TscAI CASTG 2 cut(s) 289, 322
TseFI GTSAC 3 cut(s) 55, 245, 280
TseI GCWGC 4 cut(s) 223, 226, 229, 254
Tsp45I GTSAC 3 cut(s) 55, 245, 280
TspDTI ATGAA 2 cut(s) 132, 219
TspRI CASTG 2 cut(s) 289, 322
XapI RAATTY 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.