Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004342

Physical Location & Seq

Genomic Coordinates Forward (+)

51538077 .. 51538736

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAACGCAAGAAGACCTAGCAAAGCTTGGGATGGAGGCTTTTGCTATGCTAGACAAGTACTATGGCCGGCCCACTGCCGGAGGGGGAATCAGTACTCCATTTCCTTATTCTCATGAAGATCATCACCAACCTCGAGCTCATCCTCATCACATACTAGCCGGAAGACCACGTCCTCAGCAGGGCGGTGTTATTAACAGCAAGGATGCAGCTCTGGCCTTTGGAGGGTTTGAGATCAAAGAATATGACCAAAAACGGTTTCGATCGATGTTAGTAACCTCGCTAGCTAGCTTATACTATTCGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.34

Weight (kDa)

8.07

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15990 AT4G16000 AT4G16024
fragaria_vesca	FvH4_4g18730 FvH4_4g25960
malus_domestica	MD16G1163500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0423471 RchiOBHm_Chr4g0423481
rosa_laevigata	RLG00000007556 RLG00000007557
rosa_roxburghii	Rroxscaffold_5G00365680 Rroxscaffold_5G00365690 Rroxscaffold_5G00365710
rosa_rugosa	Rorug04G0187800 Rorug04G0187900 Rorug04G0188200 Rorug04G0188300 Rorug05G0470000
rosa_samantha	Rh2AG302600 Rh2DG326700 Rh3DG172500 Rh4AG246500 Rh4AG246900 Rh4AG247000 Rh4BG252000 Rh4BG252300 Rh4BG252400 Rh4CG260500 Rh4CG260700 Rh4CG260800 Rh4DG247300 Rh4DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	67
AfaI	GTAC	2 cut(s)	62, 97
AfiI	CCNNNNNNNGG	3 cut(s)	80, 182, 225
AjiI	CACGTC	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	5 cut(s)	28, 140, 212, 287, 291
AluI	AGCT	5 cut(s)	28, 140, 212, 287, 291
Alw21I	GWGCWC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	3 cut(s)	67, 71, 216
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	119
AsuNHI	GCTAGC	2 cut(s)	283, 287
AvaI	CYCGRG	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	21, 172
Bbv12I	GWGCWC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	1 cut(s)	28
BfaI	CTAG	5 cut(s)	20, 53, 158, 284, 288
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmcAI	AGTACT	2 cut(s)	62, 97
BmeT110I	CYCGRG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	2 cut(s)	287, 291
BpiI	GAAGAC	2 cut(s)	21, 172
Bpu10I	CCTNAGC	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 182, 225
Bse118I	RCCGGY	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	266
BseGI	GGATG	3 cut(s)	39, 142, 211
BseLI	CCNNNNNNNGG	3 cut(s)	80, 182, 225
BseMII	CTCAG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	3 cut(s)	69, 73, 218
BshVI	ATCGAT	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	70, 81, 162
BslI	CCNNNNNNNGG	3 cut(s)	80, 182, 225
BsnI	GGCC	3 cut(s)	69, 73, 218
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	121, 234, 263
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	69, 73, 218
BspCNI	CTCAG	1 cut(s)	190
BspDI	ATCGAT	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	115
BspOI	GCTAGC	2 cut(s)	287, 291
BsrFI	RCCGGY	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	69
BssMI	GATC	3 cut(s)	121, 234, 263
Bst4CI	ACNGT	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	71, 285, 289
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	39, 142, 211
BstKTI	GATC	3 cut(s)	124, 237, 266
BstMBI	GATC	3 cut(s)	121, 234, 263
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	221
BstV2I	GAAGAC	2 cut(s)	21, 172
Bsu15I	ATCGAT	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	69, 73, 218
BsuTUI	ATCGAT	1 cut(s)	266
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	39, 142, 211
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	71, 285, 289
CciI	TCATGA	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	61, 96
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	2 cut(s)	61, 96
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	123, 236, 265
DpnII	GATC	3 cut(s)	121, 234, 263
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	1 cut(s)	119
FaiI	YATR	6 cut(s)	50, 66, 117, 155, 246, 295
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	3 cut(s)	46, 129, 218
FriOI	GRGCYC	1 cut(s)	142
FseI	GGCCGGCC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	5 cut(s)	20, 53, 158, 284, 288
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	69, 73, 218
HapII	CCGG	3 cut(s)	70, 81, 162
Hin1II	CATG	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	3 cut(s)	70, 81, 162
HphI	GGTGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	121, 234, 263
LpnPI	CCDG	5 cut(s)	83, 94, 167, 175, 200
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	5 cut(s)	20, 53, 158, 284, 288
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	123, 236, 265
MboI	GATC	3 cut(s)	121, 234, 263
MboII	GAAGA	3 cut(s)	26, 131, 177
MhlI	GDGCHC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	31, 77, 144, 156, 186, 218, 289
MroNI	GCCGGC	1 cut(s)	69
MseI	TTAA	1 cut(s)	195
MspI	CCGG	3 cut(s)	70, 81, 162
MwoI	GCNNNNNNNGC	1 cut(s)	215
NaeI	GCCGGC	1 cut(s)	71
NdeII	GATC	3 cut(s)	121, 234, 263
NgoMIV	GCCGGC	1 cut(s)	69
NheI	GCTAGC	2 cut(s)	283, 287
NlaIII	CATG	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	135
PagI	TCATGA	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	211
Ple19I	CGATCG	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	135
PsyI	GACNNNGTC	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	266
RigI	GGCCGGCC	1 cut(s)	73
RsaI	GTAC	2 cut(s)	62, 97
RsaNI	GTAC	2 cut(s)	61, 96
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	121, 234, 263
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	2 cut(s)	62, 97
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	9 cut(s)	21, 30, 136, 142, 175, 214, 281, 289, 293
SfaNI	GCATC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	5 cut(s)	20, 53, 158, 284, 288
SstI	GAGCTC	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	136, 262, 266
TatI	WGTACW	2 cut(s)	60, 95
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	171
XhoI	CTCGAG	1 cut(s)	135
XspI	CTAG	5 cut(s)	20, 53, 158, 284, 288
ZrmI	AGTACT	2 cut(s)	62, 97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.