Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004342

Physical Location & Seq

Genomic Coordinates Reverse (-)

18074611 .. 18077210

Gene Structure 2600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAAATACTCCAGCACTTCCGACACGGCCTCATACTGTTACTCCTCCTCCCTACGGTCGTCAAGGGGCACCGCAGAAGCAGCCCATCAACTCTGACGAGGCAGCGCAACGCTCCATCAACTCTGACGAGGCAGCGCGACGCTACGGTGGGATTGTCATTACTGAATATGACTGTGGCCTCGCTCAGCTACCAACCATCGCACCGGATCTTCAAGGCTTTGGCGACACCGACCTGTCCAGATGCACTTGCCTTCATGTGGTGGGAGATCTCGTCGCCGGTGACCAAGAGAAGGTGTTCGTGGCCAGCTTCCACCTTCGTCGGACTAGACTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

113

Amino Acids

12.14

Weight (kDa)

5.87

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15990 AT4G16000 AT4G16024
fragaria_vesca	FvH4_4g18730 FvH4_4g25960
malus_domestica	MD16G1163500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0423471 RchiOBHm_Chr4g0423481
rosa_laevigata	RLG00000007556 RLG00000007557
rosa_roxburghii	Rroxscaffold_5G00365680 Rroxscaffold_5G00365690 Rroxscaffold_5G00365710
rosa_rugosa	Rorug04G0187800 Rorug04G0187900 Rorug04G0188200 Rorug04G0188300 Rorug05G0470000
rosa_samantha	Rh2AG302600 Rh2DG326700 Rh3DG172500 Rh4AG246500 Rh4AG246900 Rh4AG247000 Rh4BG252000 Rh4BG252300 Rh4BG252400 Rh4CG260500 Rh4CG260700 Rh4CG260800 Rh4DG247300 Rh4DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccII	CGCG	1 cut(s)	139
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	56, 259, 292
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	2 cut(s)	190, 309
AluI	AGCT	2 cut(s)	190, 309
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	29, 178, 303
ApeKI	GCWGC	3 cut(s)	82, 104, 134
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	109, 139
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	94, 116, 146
BccI	CCATC	3 cut(s)	95, 125, 206
BceAI	ACGGC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	327
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	3 cut(s)	83, 105, 135
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	84, 106, 136
BmeT110I	CYCGRG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 34, 58, 64, 258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 259, 292
Bse118I	RCCGGY	1 cut(s)	278
BseLI	CCNNNNNNNGG	3 cut(s)	56, 259, 292
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	36, 39
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	3 cut(s)	94, 116, 146
Bsh1236I	CGCG	1 cut(s)	139
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	31, 180, 305
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	206, 279
BslI	CCNNNNNNNGG	3 cut(s)	56, 259, 292
BsnI	GGCC	3 cut(s)	31, 180, 305
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	208, 268
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	3 cut(s)	31, 180, 305
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	2 cut(s)	208, 268
Bst4CI	ACNGT	4 cut(s)	40, 59, 149, 176
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	109, 139
BstKTI	GATC	2 cut(s)	211, 271
BstMBI	GATC	2 cut(s)	208, 268
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstPI	GGTNACC	1 cut(s)	281
BstSLI	GKGCMC	1 cut(s)	73
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	94, 116, 146
BstX2I	RGATCY	2 cut(s)	208, 268
BstYI	RGATCY	2 cut(s)	208, 268
BsuRI	GGCC	3 cut(s)	31, 180, 305
BtgZI	GCGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	2 cut(s)	109, 139
Cfr10I	RCCGGY	1 cut(s)	278
CseI	GACGC	1 cut(s)	150
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	7 cut(s)	31, 85, 180, 190, 219, 305, 309
CviKI_1	RGCY	7 cut(s)	31, 85, 180, 190, 219, 305, 309
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	210, 270
DpnII	GATC	2 cut(s)	208, 268
EaeI	YGGCCR	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	36, 171, 258
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	83, 105, 135
Fsp4HI	GCNGC	3 cut(s)	83, 105, 135
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	2 cut(s)	108, 138
GluI	GCNGC	3 cut(s)	83, 105, 135
HaeIII	GGCC	3 cut(s)	31, 180, 305
HapII	CCGG	2 cut(s)	206, 279
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	2 cut(s)	109, 139
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	107, 137
HinP1I	GCGC	2 cut(s)	107, 137
HinfI	GANTC	1 cut(s)	330
HpaII	CCGG	2 cut(s)	206, 279
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	24, 97, 127, 324
Hpy188III	TCNNGA	1 cut(s)	240
Hpy99I	CGWCG	3 cut(s)	144, 278, 324
HpyAV	CCTTC	3 cut(s)	263, 286, 326
HpyCH4III	ACNGT	4 cut(s)	40, 59, 149, 176
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	107, 137
Kzo9I	GATC	2 cut(s)	208, 268
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	6 cut(s)	27, 219, 248, 253, 292, 319
Lsp1109I	GCAGC	3 cut(s)	94, 116, 146
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	40, 281
MalI	GATC	2 cut(s)	210, 270
MboI	GATC	2 cut(s)	208, 268
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	2 cut(s)	208, 268
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	47, 302
MnlI	CCTC	6 cut(s)	42, 57, 60, 94, 124, 191
Mox20I	TGGCCA	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	2 cut(s)	206, 279
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	208, 268
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	84, 106, 136
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	208, 268
SatI	GCNGC	3 cut(s)	83, 105, 135
Sau3AI	GATC	2 cut(s)	208, 268
SchI	GAGTC	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	192, 237, 297, 311, 318
SfaNI	GCATC	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	332
SgrAI	CRCCGGYG	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	327
TaaI	ACNGT	4 cut(s)	40, 59, 149, 176
TaqI	TCGA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	82, 104, 134
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.