Rh4AG246900

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004342
Physical Location & Seq
Forward (+)
55900479 .. 55913381
12903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG246900.1

Sequence Viewer

Length: 753 bp
ATGGGGAATGCTCAAGTTTCTGTTCCTCCTCCTACACGGCCTCCTCCAAGAACTGGTCCTAATTACACTCGTGGGGGGCATGATACCGATCGACATGCATATGCCAACATGAACAAGGATAATCGTGACCAAATTCCAGGAGTAGGAGTGCAGAAGCAAAGGCCCGTCATCACCTCTGATGAGGCTGCGCGACGCTACGGTGGGGTAGTCATTACTGAAATATACGTTGGTACACAGCCCTTGTTACAGTTCTTGGCTCCAGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTAAACTACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTCTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTACGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGTTGCTGTCGCTGTTCAAGTAGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATACTGATGATTCAACACTTCCACAGGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

250

Amino Acids

27.06

Weight (kDa)

4.91

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 82 - 242 3.8e-20 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 2 cut(s) 627, 653
AccII CGCG 1 cut(s) 190
AciI CCGC 1 cut(s) 548
AclWI GGATC 2 cut(s) 295, 427
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 692
AcyI GRCGYC 1 cut(s) 665
AfaI GTAC 3 cut(s) 232, 515, 707
AfiI CCNNNNNNNGG 3 cut(s) 53, 143, 485
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 5 cut(s) 299, 398, 611, 717, 732
AjnI CCWGG 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 2 cut(s) 295, 427
AoxI GGCC 2 cut(s) 38, 161
ApeKI GCWGC 2 cut(s) 185, 338
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 5 cut(s) 56, 162, 277, 473, 550
AsuHPI GGTGA 2 cut(s) 163, 530
AvaII GGWCC 4 cut(s) 56, 277, 473, 550
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 2 cut(s) 172, 350
BccI CCATC 2 cut(s) 350, 361
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 3 cut(s) 446, 500, 531
BisI GCNGC 2 cut(s) 186, 339
BlsI GCNGC 2 cut(s) 187, 340
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 4 cut(s) 56, 277, 473, 550
BmgT120I GGNCC 5 cut(s) 56, 162, 277, 473, 550
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 665
BsaJI CCNNGG 1 cut(s) 415
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 143, 485
Bse1I ACTGG 2 cut(s) 58, 260
Bse3DI GCAATG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 550
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 53, 143, 485
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 58, 260
BseRI GAGGAG 3 cut(s) 18, 33, 552
BseXI GCAGC 2 cut(s) 172, 350
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 40, 163
BsiEI CGRYCG 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 53, 143, 485
BsmAI GTCTC 1 cut(s) 672
BsmBI CGTCTC 1 cut(s) 672
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 2 cut(s) 40, 163
Bsp143I GATC 3 cut(s) 88, 287, 419
BspACI CCGC 1 cut(s) 548
BspANI GGCC 2 cut(s) 40, 163
BspCNI CTCAG 1 cut(s) 559
BspFNI CGCG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 295, 427
BsrDI GCAATG 1 cut(s) 557
BsrI ACTGG 2 cut(s) 58, 260
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 3 cut(s) 88, 287, 419
BssNAI GTATAC 1 cut(s) 654
BssNI GRCGYC 1 cut(s) 665
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 6 cut(s) 200, 249, 281, 513, 518, 554
BstACI GRCGYC 1 cut(s) 665
BstDEI CTNAG 2 cut(s) 567, 680
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 91, 290, 422
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 3 cut(s) 88, 287, 419
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 398, 554, 568
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 2 cut(s) 98, 751
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 172, 350
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
BstZ17I GTATAC 1 cut(s) 654
BsuRI GGCC 2 cut(s) 40, 163
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 267
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 5 cut(s) 56, 162, 277, 473, 550
CpoI CGGWCCG 1 cut(s) 550
CseI GACGC 2 cut(s) 201, 654
Csp6I GTAC 3 cut(s) 231, 514, 706
CspI CGGWCCG 1 cut(s) 550
CviAII CATG 5 cut(s) 80, 95, 109, 321, 748
CviJI RGCY 8 cut(s) 40, 163, 185, 238, 257, 401, 491, 699
CviKI_1 RGCY 8 cut(s) 40, 163, 185, 238, 257, 401, 491, 699
CviQI GTAC 3 cut(s) 231, 514, 706
DdeI CTNAG 2 cut(s) 567, 680
DpnI GATC 3 cut(s) 90, 289, 421
DpnII GATC 3 cut(s) 88, 287, 419
DraI TTTAAA 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 415
Eco47I GGWCC 4 cut(s) 56, 277, 473, 550
Eco57I CTGAAG 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 672
FaeI CATG 5 cut(s) 83, 98, 112, 324, 751
FatI CATG 5 cut(s) 79, 94, 108, 320, 747
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 2 cut(s) 627, 653
Fnu4HI GCNGC 2 cut(s) 186, 339
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 2 cut(s) 186, 339
FspBI CTAG 3 cut(s) 446, 500, 531
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 186, 339
GsaI CCCAGC 1 cut(s) 495
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 2 cut(s) 40, 163
HgaI GACGC 2 cut(s) 201, 654
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 5 cut(s) 83, 98, 112, 324, 751
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 453, 728
HphI GGTGA 2 cut(s) 163, 530
Hpy166II GTNNAC 4 cut(s) 233, 521, 628, 654
Hpy188I TCNGA 3 cut(s) 178, 424, 672
Hpy188III TCNNGA 3 cut(s) 125, 479, 566
Hpy8I GTNNAC 4 cut(s) 233, 521, 628, 654
Hpy99I CGWCG 1 cut(s) 195
HpyCH4III ACNGT 6 cut(s) 200, 249, 281, 513, 518, 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 98, 151, 443, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 554, 568
HpyF3I CTNAG 2 cut(s) 567, 680
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 5 cut(s) 83, 98, 112, 324, 751
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 3 cut(s) 88, 287, 419
LmnI GCTCC 2 cut(s) 262, 488
Lsp1109I GCAGC 2 cut(s) 172, 350
LweI GCATC 1 cut(s) 535
MaeI CTAG 3 cut(s) 446, 500, 531
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 125, 243, 640
MalI GATC 3 cut(s) 90, 289, 421
MboI GATC 3 cut(s) 88, 287, 419
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 1 cut(s) 419
MluCI AATT 4 cut(s) 61, 132, 303, 393
MlyI GAGTC 1 cut(s) 462
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 393
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 398, 554, 568
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 88, 287, 419
NlaIII CATG 5 cut(s) 83, 98, 112, 324, 751
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 2 cut(s) 98, 751
PciI ACATGT 1 cut(s) 747
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 728
PflMI CCANNNNNTGG 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 187, 340
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PscI ACATGT 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 5 cut(s) 56, 162, 277, 473, 550
PsuI RGATCY 1 cut(s) 419
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 3 cut(s) 232, 515, 707
RsaNI GTAC 3 cut(s) 231, 514, 706
RseI CAYNNNNRTG 1 cut(s) 99
Rsr2I CGGWCCG 1 cut(s) 550
RsrII CGGWCCG 1 cut(s) 550
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 2 cut(s) 186, 339
Sau3AI GATC 3 cut(s) 88, 287, 419
Sau96I GGNCC 5 cut(s) 56, 162, 277, 473, 550
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 1 cut(s) 138
SetI ASST 8 cut(s) 176, 228, 382, 417, 451, 493, 580, 619
SfaNI GCATC 1 cut(s) 535
SinI GGWCC 4 cut(s) 56, 277, 473, 550
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 4 cut(s) 61, 132, 303, 393
SsiI CCGC 1 cut(s) 548
SspMI CTAG 3 cut(s) 446, 500, 531
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 6 cut(s) 200, 249, 281, 513, 518, 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 91
TasI AATT 4 cut(s) 61, 132, 303, 393
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 185, 338
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 125, 309
TspRI CASTG 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 4 cut(s) 56, 277, 473, 550
XapI RAATTY 1 cut(s) 132
XceI RCATGY 2 cut(s) 98, 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XmiI GTMKAC 2 cut(s) 627, 653
XspI CTAG 3 cut(s) 446, 500, 531
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.