Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004342

Physical Location & Seq

Genomic Coordinates Forward (+)

45952875 .. 46004240

Gene Structure 51366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCAAGGCAAGAAGACCTAGCAAAGCTTGCCATGGAGGCTTTTGCTATGATAGACAGGCAATATGGCCGGTCCGCCACTGGAAGGGGAACCAGTTATTCTCATGAAGATCATCACCAACCTCGAGCTCATCCTCAGGCCGGTGTTATTAACAGCAAGGATGCAGCTCGGGCCTTTGGAGGGTTAGAGATAAGAGAATATGACCAAAAACTGTTTGGACTATTTAAAGTTTGGTGCAAGCTTGTTATCATTTTCCGTGACTTGGACTTACCGATTGATTTACAAATAGATCGAGGTAATGGAATGATGGATTCTGCTCAAGTCCCCTGTGTTGCAATAAATTTAGGAGAGGATATTGTAAATTATGCCAATATCCTCAATGGAAGCTCAGGGCATAATGATAATATGTTTTCAATGTTTGGTTATCCTGCATCTGGTGATGCTATTAGCTATAGTCAGAACCCTATTCAAAGTCAAGTTGTTGTTCAAAATGAACCCAAACCACAAAGAAAGCTAAAAGAGCCAAGAATTTCTCCATTCAAGAAGACAACCTTCTTGTGTCTGCCTGGCTCAATACTACCCTTGATCCAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

198

Amino Acids

22.07

Weight (kDa)

6.96

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15990 AT4G16000 AT4G16024
fragaria_vesca	FvH4_4g18730 FvH4_4g25960
malus_domestica	MD16G1163500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0423471 RchiOBHm_Chr4g0423481
rosa_laevigata	RLG00000007556 RLG00000007557
rosa_roxburghii	Rroxscaffold_5G00365680 Rroxscaffold_5G00365690 Rroxscaffold_5G00365710
rosa_rugosa	Rorug04G0187800 Rorug04G0187900 Rorug04G0188200 Rorug04G0188300 Rorug05G0470000
rosa_samantha	Rh2AG302600 Rh2DG326700 Rh3DG172500 Rh4AG246500 Rh4AG246900 Rh4AG247000 Rh4BG252000 Rh4BG252300 Rh4BG252400 Rh4CG260500 Rh4CG260700 Rh4CG260800 Rh4DG247300 Rh4DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	2 cut(s)	340, 528
AfiI	CCNNNNNNNGG	5 cut(s)	84, 140, 180, 262, 434
AgsI	TTSAA	4 cut(s)	414, 470, 488, 541
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	7 cut(s)	28, 128, 167, 241, 387, 450, 514
AluI	AGCT	7 cut(s)	28, 128, 167, 241, 387, 450, 514
Alw21I	GWGCWC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	580
Ama87I	CYCGRG	2 cut(s)	123, 168
AoxI	GGCC	3 cut(s)	67, 138, 171
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	340, 528
AspS9I	GGNCC	2 cut(s)	72, 171
AsuHPI	GGTGA	2 cut(s)	107, 449
AvaI	CYCGRG	2 cut(s)	123, 168
AvaII	GGWCC	1 cut(s)	72
AxyI	CCTNAGG	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	21, 551
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	567
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	451
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	2 cut(s)	123, 168
BmgT120I	GGNCC	2 cut(s)	72, 171
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	151, 430, 440
BpiI	GAAGAC	2 cut(s)	21, 551
Bpu10I	CCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 140, 180, 262, 434
Bse118I	RCCGGY	2 cut(s)	69, 140
Bse1I	ACTGG	2 cut(s)	85, 93
Bse21I	CCTNAGG	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	2 cut(s)	130, 166
BseLI	CCNNNNNNNGG	5 cut(s)	84, 140, 180, 262, 434
BseMII	CTCAG	2 cut(s)	149, 402
BseNI	ACTGG	2 cut(s)	85, 93
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	3 cut(s)	69, 140, 173
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	2 cut(s)	123, 168
BsiSI	CCGG	2 cut(s)	70, 141
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	5 cut(s)	84, 140, 180, 262, 434
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	69, 140, 173
BsoBI	CYCGRG	2 cut(s)	123, 168
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	109, 289, 585
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	69, 140, 173
BspCNI	CTCAG	2 cut(s)	148, 401
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	580
BsrFI	RCCGGY	2 cut(s)	69, 140
BsrI	ACTGG	2 cut(s)	85, 93
BssAI	RCCGGY	2 cut(s)	69, 140
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	109, 289, 585
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	30, 239
BstDEI	CTNAG	2 cut(s)	135, 388
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	130, 166
BstKTI	GATC	3 cut(s)	112, 292, 588
BstMBI	GATC	3 cut(s)	109, 289, 585
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 170, 520
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	21, 551
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	69, 140, 173
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	130, 166
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	30, 239
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	69, 140
Cfr13I	GGNCC	2 cut(s)	72, 171
CpoI	CGGWCCG	1 cut(s)	72
CspI	CGGWCCG	1 cut(s)	72
CviAII	CATG	2 cut(s)	34, 104
DdeI	CTNAG	2 cut(s)	135, 388
DpnI	GATC	3 cut(s)	111, 291, 587
DpnII	GATC	3 cut(s)	109, 289, 585
DraI	TTTAAA	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	135
Eco88I	CYCGRG	2 cut(s)	123, 168
EcoICRI	GAGCTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 107
FaiI	YATR	9 cut(s)	35, 50, 66, 105, 201, 366, 396, 407, 453
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	33, 103
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	117, 173
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	69, 140, 173
HapII	CCGG	2 cut(s)	70, 141
Hin1II	CATG	2 cut(s)	37, 107
HindIII	AAGCTT	2 cut(s)	26, 239
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	70, 141
HphI	GGTGA	2 cut(s)	107, 449
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	2 cut(s)	104, 541
HpyAV	CCTTC	2 cut(s)	78, 562
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	164, 237, 335, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 170, 520
HpyF3I	CTNAG	2 cut(s)	135, 388
Hsp92II	CATG	2 cut(s)	37, 107
Kzo9I	GATC	3 cut(s)	109, 289, 585
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	3 cut(s)	151, 430, 440
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	111, 291, 587
MboI	GATC	3 cut(s)	109, 289, 585
MboII	GAAGA	3 cut(s)	26, 119, 556
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	340, 361, 528
MnlI	CCTC	7 cut(s)	31, 132, 144, 173, 287, 343, 386
MseI	TTAA	2 cut(s)	150, 225
MspI	CCGG	2 cut(s)	70, 141
MspR9I	CCNGG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 170, 520
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	109, 289, 585
NlaIII	CATG	2 cut(s)	37, 107
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	123
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	72, 171
PspXI	VCTCGAGB	1 cut(s)	123
Rsr2I	CGGWCCG	1 cut(s)	72
RsrII	CGGWCCG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	150, 225
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	109, 289, 585
Sau96I	GGNCC	2 cut(s)	72, 171
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	151, 430, 440
SfcI	CTRYAG	1 cut(s)	451
Sfr274I	CTCGAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	123, 318
SmoI	CTYRAG	2 cut(s)	123, 318
Sse9I	AATT	3 cut(s)	340, 361, 528
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	124, 292
TasI	AATT	3 cut(s)	340, 361, 528
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	150, 225
Tru9I	TTAA	2 cut(s)	150, 225
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	120, 507
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	340, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XhoI	CTCGAG	1 cut(s)	123
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.