Rh4CG260800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004342
Physical Location & Seq
Forward (+)
51564219 .. 51566050
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG260800.1

Sequence Viewer

Length: 303 bp
ATGGGAAATACTGAAGCACCTTCGACACGGCCTCAACCAAGGAATACTATTACTCCTCCTAACTACCCTTGTCCAGGAGCACTGCAGAAGCAGCCCATCAACTCTGACGAGGCAGCGCGACGCTACGGTGGGATTGTCATTACTGAATATGAGGAACGCAAATTTGTACAATGGGACGCATGCTGCGATTGCATTACTTCAACCACAAACCCGCTTGTGGTGGCAGGTTCAAGCTCCTCGTCTAAATCTGAGTTTCTCCGTTTCAGGACATCCGAAAAGATGAAACGATACAATAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.21

Weight (kDa)

8.78

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 215
AccII CGCG 1 cut(s) 118
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 74, 217
AgsI TTSAA 2 cut(s) 201, 231
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 82
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 3 cut(s) 91, 113, 183
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 103, 125, 170
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 3 cut(s) 92, 114, 184
BlsI GCNGC 3 cut(s) 93, 115, 185
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 217
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 269
BseLI CCNNNNNNNGG 2 cut(s) 74, 217
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 45, 226
BseXI GCAGC 3 cut(s) 103, 125, 170
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 74, 217
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 166
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 215
BsrGI TGTACA 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 249
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 91, 189
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 103, 125, 170
BsuRI GGCC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 118
CseI GACGC 2 cut(s) 129, 185
Csp6I GTAC 1 cut(s) 167
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 31, 94, 234
CviKI_1 RGCY 3 cut(s) 31, 94, 234
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 183
FaiI YATR 2 cut(s) 150, 181
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 179
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 92, 114, 184
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 3 cut(s) 92, 114, 184
GlaI GCGC 1 cut(s) 117
GluI GCNGC 3 cut(s) 92, 114, 184
HaeIII GGCC 1 cut(s) 31
HgaI GACGC 2 cut(s) 129, 185
HhaI GCGC 1 cut(s) 118
Hin1II CATG 1 cut(s) 183
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
Hpy188I TCNGA 3 cut(s) 106, 250, 274
Hpy188III TCNNGA 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 85, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 189
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 1 cut(s) 183
HspAI GCGC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 77, 239
LpnPI CCDG 4 cut(s) 60, 87, 210, 250
Lsp1109I GCAGC 3 cut(s) 103, 125, 170
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 2 cut(s) 161, 298
MnlI CCTC 5 cut(s) 42, 66, 103, 145, 247
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 91, 189
NlaIII CATG 1 cut(s) 183
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 3 cut(s) 93, 115, 185
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PstI CTGCAG 1 cut(s) 87
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SatI GCNGC 3 cut(s) 92, 114, 184
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 82
SetI ASST 3 cut(s) 22, 229, 236
SfcI CTRYAG 1 cut(s) 83
SphI GCATGC 1 cut(s) 183
Sse9I AATT 2 cut(s) 161, 298
SsiI CCGC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 23
TasI AATT 2 cut(s) 161, 298
TatI WGTACW 1 cut(s) 166
TscAI CASTG 1 cut(s) 87
TseI GCWGC 3 cut(s) 91, 113, 183
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 87
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.