Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004342

Physical Location & Seq

Genomic Coordinates Forward (+)

47240642 .. 47342632

Gene Structure 101991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCAAGGCAAGAAGACCTAGCAAAGCTTGCGATGGAGGCTTTTGCTATGCTAGACAAGCAATATGGCCGGCCCGCCACTGGAAGGGGAACCAGTTATTCTCATGAAGATCATCACCAACCTCGAGCTCATCCTCAGGACATACTAGCCGGAAGACCACATCCTCAGGAGGCCGGTGTTATTAACAGCAAGGATGCAGCTCTGGCCTTTGGAGGGTTTGAGATCAGAAAGTATGACCAAAAAGGGTTTCGACTTCCGACGTCCATAGGCTCAGGACAAAAAAGAAGACGAACACGCTCATCATATTCGCTTACAGGGTCAGTATCCCATGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

9.91

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15990 AT4G16000 AT4G16024
fragaria_vesca	FvH4_4g18730 FvH4_4g25960
malus_domestica	MD16G1163500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0423471 RchiOBHm_Chr4g0423481
rosa_laevigata	RLG00000007556 RLG00000007557
rosa_roxburghii	Rroxscaffold_5G00365680 Rroxscaffold_5G00365690 Rroxscaffold_5G00365710
rosa_rugosa	Rorug04G0187800 Rorug04G0187900 Rorug04G0188200 Rorug04G0188300 Rorug05G0470000
rosa_samantha	Rh2AG302600 Rh2DG326700 Rh3DG172500 Rh4AG246500 Rh4AG246900 Rh4AG247000 Rh4BG252000 Rh4BG252300 Rh4BG252400 Rh4CG260500 Rh4CG260700 Rh4CG260800 Rh4DG247300 Rh4DG247400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	260
AfiI	CCNNNNNNNGG	3 cut(s)	80, 84, 213
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	3 cut(s)	28, 128, 200
AluI	AGCT	3 cut(s)	28, 128, 200
Alw21I	GWGCWC	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	4 cut(s)	67, 71, 171, 204
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	123
AxyI	CCTNAGG	2 cut(s)	135, 165
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	3 cut(s)	21, 160, 292
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	334
BfaI	CTAG	3 cut(s)	20, 53, 146
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	3 cut(s)	21, 160, 292
Bpu10I	CCTNAGC	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 84, 213
Bse118I	RCCGGY	2 cut(s)	69, 173
Bse1I	ACTGG	2 cut(s)	85, 93
Bse21I	CCTNAGG	2 cut(s)	135, 165
BseGI	GGATG	3 cut(s)	130, 160, 199
BseLI	CCNNNNNNNGG	3 cut(s)	80, 84, 213
BseMII	CTCAG	3 cut(s)	149, 179, 285
BseNI	ACTGG	2 cut(s)	85, 93
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	4 cut(s)	69, 73, 173, 206
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	70, 150, 174
BslI	CCNNNNNNNGG	3 cut(s)	80, 84, 213
BsnI	GGCC	4 cut(s)	69, 73, 173, 206
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	2 cut(s)	109, 222
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	4 cut(s)	69, 73, 173, 206
BspCNI	CTCAG	3 cut(s)	148, 178, 284
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	91
BsrFI	RCCGGY	2 cut(s)	69, 173
BsrI	ACTGG	2 cut(s)	85, 93
BssAI	RCCGGY	2 cut(s)	69, 173
BssMI	GATC	2 cut(s)	109, 222
BssNI	GRCGYC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	30, 71, 75
BstDEI	CTNAG	3 cut(s)	135, 165, 271
BstF5I	GGATG	3 cut(s)	130, 160, 199
BstKTI	GATC	2 cut(s)	112, 225
BstMBI	GATC	2 cut(s)	109, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 58, 203
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	3 cut(s)	21, 160, 292
Bsu36I	CCTNAGG	2 cut(s)	135, 165
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	4 cut(s)	69, 73, 173, 206
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	130, 160, 199
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	30, 71, 75
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	69, 173
Cfr13I	GGNCC	1 cut(s)	72
CviAII	CATG	2 cut(s)	104, 329
DdeI	CTNAG	3 cut(s)	135, 165, 271
DpnI	GATC	2 cut(s)	111, 224
DpnII	GATC	2 cut(s)	109, 222
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	128
Eco81I	CCTNAGG	2 cut(s)	135, 165
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	2 cut(s)	107, 332
FaiI	YATR	8 cut(s)	50, 66, 105, 143, 234, 266, 304, 330
FatI	CATG	2 cut(s)	103, 328
FauI	CCCGC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	3 cut(s)	117, 147, 206
FriOI	GRGCYC	1 cut(s)	130
FseI	GGCCGGCC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	3 cut(s)	20, 53, 146
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	4 cut(s)	69, 73, 173, 206
HapII	CCGG	3 cut(s)	70, 150, 174
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	2 cut(s)	107, 332
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	3 cut(s)	70, 150, 174
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	227, 258
Hpy188III	TCNNGA	4 cut(s)	104, 137, 167, 273
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 58, 203
HpyF3I	CTNAG	3 cut(s)	135, 165, 271
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	107, 332
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	109, 222
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	3 cut(s)	20, 53, 146
MaeII	ACGT	1 cut(s)	260
MalI	GATC	2 cut(s)	111, 224
MboI	GATC	2 cut(s)	109, 222
MboII	GAAGA	4 cut(s)	26, 119, 165, 297
MhlI	GDGCHC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	31, 132, 144, 163, 174, 206
MroNI	GCCGGC	1 cut(s)	69
MseI	TTAA	1 cut(s)	183
MspI	CCGG	3 cut(s)	70, 150, 174
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 58, 203
NaeI	GCCGGC	1 cut(s)	71
NdeII	GATC	2 cut(s)	109, 222
NgoMIV	GCCGGC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	107, 332
NlaIV	GGNNCC	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	123
PagI	TCATGA	1 cut(s)	103
PdiI	GCCGGC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	72
PspXI	VCTCGAGB	1 cut(s)	123
RigI	GGCCGGCC	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	109, 222
Sau96I	GGNCC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	6 cut(s)	21, 30, 124, 130, 202, 263
SfaNI	GCATC	1 cut(s)	184
Sfr274I	CTCGAG	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	3 cut(s)	20, 53, 146
SstI	GAGCTC	1 cut(s)	130
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	124, 250
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	123
XspI	CTAG	3 cut(s)	20, 53, 146
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.