MD16G1163500.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0004342
Physical Location & Seq
Reverse (-)
13440189 .. 13450315
10127 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1163500.v1.1.491

Sequence Viewer

Length: 237 bp
ATGGGATTACTAATGATGAAGTCAAAAGCCATTTGTAGTGATCATGATTACCAAGGATACCGAGGACAGGTGACTGCAGCCAACATGGAGAATCGTCATAGAGCTCCACAGAACCTTCAGAGGCCTAACAAGCCCATCAACTCAGACGAGGCAGCGATAATCTATGGTGGGATATCCGTCACAGAAGTGTATGGTACTCGTACCGGTAAACCGATCAATAATAGGCGTTTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

79

Amino Acids

8.82

Weight (kDa)

9.73

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 196, 202
AfiI CCNNNNNNNGG 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 203
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 106
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 77, 152
AsiGI ACCGGT 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 82
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 89, 164
BccI CCATC 1 cut(s) 143
BciVI GTATCC 1 cut(s) 50
BclI TGATCA 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 50
BisI GCNGC 2 cut(s) 78, 153
BlsI GCNGC 2 cut(s) 79, 154
BsaJI CCNNGG 2 cut(s) 52, 61
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 52, 61
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 2 cut(s) 89, 164
BshFI GGCC 1 cut(s) 124
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 67
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 40, 213
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 43
BspMAI CTGCAG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 52, 61
BssMI GATC 2 cut(s) 40, 213
BssT1I CCWWGG 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 142
BstKTI GATC 2 cut(s) 43, 216
BstMBI GATC 2 cut(s) 40, 213
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 89, 164
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 124
CciI TCATGA 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 203
Csp6I GTAC 2 cut(s) 195, 201
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 44, 85
CviJI RGCY 5 cut(s) 29, 80, 104, 124, 133
CviKI_1 RGCY 5 cut(s) 29, 80, 104, 124, 133
CviQI GTAC 2 cut(s) 195, 201
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 42, 215
DpnII GATC 2 cut(s) 40, 213
Ecl136II GAGCTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 52
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 104
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 47, 88
FaiI YATR 5 cut(s) 45, 86, 99, 165, 192
FatI CATG 2 cut(s) 43, 84
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 78, 153
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 78, 153
GluI GCNGC 2 cut(s) 78, 153
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 204
Hin1II CATG 2 cut(s) 47, 88
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 120, 145
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 2 cut(s) 47, 88
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 2 cut(s) 40, 213
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 53, 217
Lsp1109I GCAGC 2 cut(s) 89, 164
MaeIII GTNAC 2 cut(s) 70, 178
MalI GATC 2 cut(s) 42, 215
MboI GATC 2 cut(s) 40, 213
MhlI GDGCHC 1 cut(s) 106
MnlI CCTC 3 cut(s) 56, 114, 142
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 40, 213
NlaIII CATG 2 cut(s) 47, 88
NmuCI GTSAC 2 cut(s) 70, 178
OliI CACNNNNGTG 1 cut(s) 185
PagI TCATGA 1 cut(s) 43
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 2 cut(s) 79, 154
Psp124BI GAGCTC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 79
RsaI GTAC 2 cut(s) 196, 202
RsaNI GTAC 2 cut(s) 195, 201
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 106
SatI GCNGC 2 cut(s) 78, 153
Sau3AI GATC 2 cut(s) 40, 213
SduI GDGCHC 1 cut(s) 106
SetI ASST 3 cut(s) 72, 106, 117
SfcI CTRYAG 1 cut(s) 75
SgeI CNNG 9 cut(s) 56, 65, 74, 80, 97, 142, 160, 210, 216
SmiMI CAYNNNNRTG 1 cut(s) 185
SseBI AGGCCT 1 cut(s) 124
SstI GAGCTC 1 cut(s) 106
StuI AGGCCT 1 cut(s) 124
StyI CCWWGG 1 cut(s) 52
TfiI GAWTC 1 cut(s) 91
TseFI GTSAC 2 cut(s) 70, 178
TseI GCWGC 2 cut(s) 77, 152
Tsp45I GTSAC 2 cut(s) 70, 178
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.