RLG00000007557

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004342
Physical Location & Seq
Reverse (-)
18090022 .. 18090456
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007557

Sequence Viewer

Length: 435 bp
ATGTGCAATAATATTCAAGTGAGCGTACTGCTTAAGCTTCCGAGACTGCTTCTATATAATGGAGCTTTGGCCGCCAACAATATTTGTCAAAAAACAAAGCAGATCTACTACTACGCAGAGCTAGATTGCTTCCTATATATAATTCCTCCAATTCCTTGTAACATGGGGAATGCTCAAGTTTCTGTTCCTCCTCCTACACGGCCTCCTCCAAGAACTGGTCCTAATTACACTCGTGGGGGACATGATACCGATCCACATGCATATGCCAACATGAACAAGGATAATCGTGACCAAATTCCAGGGGTAGGAGTGCAGAAGCAAAGGCCCGTCATCACCTCTGATGAGGCTGCGCGACGCTACGGTGGGGTAGTCATTACTGAAATATACGGTACTGCTACGAATAAAACTGCGATCAATCGTAATTGGCGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.11

Weight (kDa)

9.39

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 215
AccII CGCG 1 cut(s) 352
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 245
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 2 cut(s) 27, 391
AfiI CCNNNNNNNGG 2 cut(s) 215, 305
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 3 cut(s) 37, 65, 121
AluI AGCT 3 cut(s) 37, 65, 121
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 1 cut(s) 245
AoxI GGCC 3 cut(s) 69, 200, 323
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 294
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 2 cut(s) 218, 324
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 231
BbvI GCAGC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 122
BfrI CTTAAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 102
BisI GCNGC 2 cut(s) 72, 348
BlsI GCNGC 2 cut(s) 73, 349
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 218, 324
BmrFI CCNGG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 305
Bse1I ACTGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 215, 305
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 180, 195
BseXI GCAGC 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 3 cut(s) 71, 202, 325
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 215, 305
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 3 cut(s) 71, 202, 325
Bsp143I GATC 3 cut(s) 102, 250, 411
BspACI CCGC 1 cut(s) 72
BspANI GGCC 3 cut(s) 71, 202, 325
BspFNI CGCG 1 cut(s) 352
BspPI GGATC 1 cut(s) 245
BspTI CTTAAG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 3 cut(s) 102, 250, 411
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 362, 389
BstAFI CTTAAG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 3 cut(s) 105, 253, 414
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 102, 250, 411
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 3 cut(s) 71, 202, 325
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 218, 324
CseI GACGC 1 cut(s) 363
Csp6I GTAC 2 cut(s) 26, 390
CviAII CATG 4 cut(s) 163, 242, 257, 271
CviJI RGCY 7 cut(s) 37, 65, 71, 121, 202, 325, 347
CviKI_1 RGCY 7 cut(s) 37, 65, 71, 121, 202, 325, 347
CviQI GTAC 2 cut(s) 26, 390
DpnI GATC 3 cut(s) 104, 252, 413
DpnII GATC 3 cut(s) 102, 250, 411
EaeI YGGCCR 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 262
FaeI CATG 4 cut(s) 166, 245, 260, 274
FaqI GGGAC 1 cut(s) 252
FatI CATG 4 cut(s) 162, 241, 256, 270
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 72, 348
Fsp4HI GCNGC 2 cut(s) 72, 348
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 351
GluI GCNGC 2 cut(s) 72, 348
HaeIII GGCC 3 cut(s) 71, 202, 325
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 166, 245, 260, 274
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 35
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 42, 340
Hpy188III TCNNGA 1 cut(s) 287
Hpy99I CGWCG 1 cut(s) 357
HpyCH4III ACNGT 2 cut(s) 362, 389
HpyCH4V TGCA 3 cut(s) 6, 260, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
Hsp92II CATG 4 cut(s) 166, 245, 260, 274
HspAI GCGC 1 cut(s) 350
Kzo9I GATC 3 cut(s) 102, 250, 411
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 3 cut(s) 201, 285, 312
Lsp1109I GCAGC 1 cut(s) 334
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 158, 287
MalI GATC 3 cut(s) 104, 252, 413
MboI GATC 3 cut(s) 102, 250, 411
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 141, 150, 223, 294, 421
MnlI CCTC 7 cut(s) 156, 198, 201, 213, 216, 337, 346
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 2 cut(s) 33, 433
MslI CAYNNNNRTG 1 cut(s) 261
MspCI CTTAAG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 262
NdeII GATC 3 cut(s) 102, 250, 411
NlaIII CATG 4 cut(s) 166, 245, 260, 274
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 424
PctI GAATGC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 2 cut(s) 73, 349
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 2 cut(s) 218, 324
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 2 cut(s) 27, 391
RsaNI GTAC 2 cut(s) 26, 390
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 33, 433
SatI GCNGC 2 cut(s) 72, 348
Sau3AI GATC 3 cut(s) 102, 250, 411
Sau96I GGNCC 2 cut(s) 218, 324
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 39, 67, 123, 338
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 32, 174
SmoI CTYRAG 2 cut(s) 32, 174
Sse9I AATT 5 cut(s) 141, 150, 223, 294, 421
SsiI CCGC 1 cut(s) 72
SspI AATATT 2 cut(s) 13, 82
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 362, 389
TasI AATT 5 cut(s) 141, 150, 223, 294, 421
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 33, 433
Tru9I TTAA 2 cut(s) 33, 433
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 215
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 294
XceI RCATGY 1 cut(s) 260
XspI CTAG 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.