Rh3DG172500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004342
Physical Location & Seq
Forward (+)
15167603 .. 15167806
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG172500.1

Sequence Viewer

Length: 204 bp
ATGGAGGCTCCAAAACCAGACTCTGGCCTCGCTCGGCTACCGACCGTCTCACTGGATCTTCAAGGCTTCGGTGACACCGACCTGTCCAGATGCACTTACCTTCACGTGATGGGAAATCTAGTCGCCGGCAACCAGGAGAAGGTGTTTGTGGCCAGCTTCCACCTCTGTCGGACTATCTGCCGGACCCAGACCAGGCTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.41

Weight (kDa)

6.71

Isoelectric Point (pI)

23.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 23
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 150
AcvI CACGTG 1 cut(s) 106
AfiI CCNNNNNNNGG 3 cut(s) 23, 139, 192
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 2 cut(s) 132, 191
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 2 cut(s) 25, 150
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 152
BbrPI CACGTG 1 cut(s) 106
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 134, 193
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 134, 193
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 9, 185
BmrFI CCNGG 2 cut(s) 134, 193
BmsI GCATC 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 139, 192
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 134, 193
BseLI CCNNNNNNNGG 3 cut(s) 23, 139, 192
BseNI ACTGG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 27, 152
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 2 cut(s) 126, 181
BslI CCNNNNNNNGG 3 cut(s) 23, 139, 192
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 2 cut(s) 27, 152
Bsp143I GATC 1 cut(s) 55
BspANI GGCC 2 cut(s) 27, 152
BspLI GGNNCC 2 cut(s) 9, 185
BspPI GGATC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 125
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 2 cut(s) 134, 193
Bst4CI ACNGT 1 cut(s) 46
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 127, 154
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 55
BstMCI CGRYCG 1 cut(s) 45
BstNI CCWGG 2 cut(s) 134, 193
BstSCI CCNGG 2 cut(s) 132, 191
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 2 cut(s) 27, 152
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 127, 154
CaiI CAGNNNCTG 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 183
CviJI RGCY 7 cut(s) 8, 27, 37, 66, 152, 156, 196
CviKI_1 RGCY 7 cut(s) 8, 27, 37, 66, 152, 156, 196
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 132, 191
Esp3I CGTCTC 1 cut(s) 52
FspBI CTAG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 27, 152
HapII CCGG 2 cut(s) 126, 181
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 126, 181
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 110, 133
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 105
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 13
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 50
MflI RGATCY 1 cut(s) 55
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 2 cut(s) 38, 173
Mox20I TGGCCA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 125
MscI TGGCCA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 2 cut(s) 126, 181
MspR9I CCNGG 2 cut(s) 134, 193
MvaI CCWGG 2 cut(s) 134, 193
NaeI GCCGGC 1 cut(s) 127
NdeII GATC 1 cut(s) 55
NgoMIV GCCGGC 1 cut(s) 125
NlaIV GGNNCC 2 cut(s) 9, 185
NmeAIII GCCGAG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 127
PflMI CCANNNNNTGG 1 cut(s) 23
PleI GAGTC 1 cut(s) 14
PmaCI CACGTG 1 cut(s) 106
PmlI CACGTG 1 cut(s) 106
PpsI GAGTC 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 132, 191
PspCI CACGTG 1 cut(s) 106
PspGI CCWGG 2 cut(s) 132, 191
PspN4I GGNNCC 2 cut(s) 9, 185
PspPI GGNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 55
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 2 cut(s) 134, 193
SetI ASST 6 cut(s) 84, 102, 108, 144, 158, 165
SfaNI GCATC 1 cut(s) 80
SinI GGWCC 1 cut(s) 183
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 132, 191
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 108
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 183
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.