RchiOBHm_Chr4g0423471

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004342
Physical Location & Seq
Forward (+)
49100214 .. 49100804
591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39283

Sequence Viewer

Length: 270 bp
ATGGCAACGCAAGAAGACCTAGCAAAGCTTGGGATGGAGGCTTTTGCTATGCTAGACAAGTACTATGGCCGGCCCATTGCCGGAGGGGGAATCAGGACTCCATTTCCTTATTCTCATGAAGATCATCACCAACCTCGAGCTCATCCTCATCACATACTAGCCGGAAGACCACGTCCTCAGCAGGCCGGTGTTATTAACAGCAAGGATGCAGCTCTGGCCTTTGGAGGGTTTGAGATCAAAGAATATGACCAAAAACGGTTTCGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.02

Weight (kDa)

8.85

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 67
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 80, 225
AjiI CACGTC 1 cut(s) 173
AjuI GAANNNNNNNTTGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 28, 140, 212
AluI AGCT 3 cut(s) 28, 140, 212
Alw21I GWGCWC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 4 cut(s) 67, 71, 183, 216
ApeKI GCWGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 135
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 2 cut(s) 21, 172
Bbv12I GWGCWC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 28
BfaI CTAG 3 cut(s) 20, 53, 158
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmcAI AGTACT 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 2 cut(s) 21, 172
Bpu10I CCTNAGC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 225
Bse118I RCCGGY 2 cut(s) 69, 185
Bse3DI GCAATG 1 cut(s) 75
BseGI GGATG 3 cut(s) 39, 142, 211
BseLI CCNNNNNNNGG 2 cut(s) 80, 225
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 4 cut(s) 69, 73, 185, 218
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 4 cut(s) 70, 81, 162, 186
BslI CCNNNNNNNGG 2 cut(s) 80, 225
BsnI GGCC 4 cut(s) 69, 73, 185, 218
BsoBI CYCGRG 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 121, 234
BspANI GGCC 4 cut(s) 69, 73, 185, 218
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 2 cut(s) 69, 185
BssAI RCCGGY 2 cut(s) 69, 185
BssMI GATC 2 cut(s) 121, 234
Bst4CI ACNGT 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 71, 183
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 39, 142, 211
BstKTI GATC 2 cut(s) 124, 237
BstMBI GATC 2 cut(s) 121, 234
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 21, 172
BsuRI GGCC 4 cut(s) 69, 73, 185, 218
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 3 cut(s) 39, 142, 211
Cac8I GCNNGC 2 cut(s) 71, 183
CciI TCATGA 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 69, 185
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 116
CviJI RGCY 9 cut(s) 28, 41, 69, 73, 140, 161, 185, 212, 218
CviKI_1 RGCY 9 cut(s) 28, 41, 69, 73, 140, 161, 185, 212, 218
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 123, 236
DpnII GATC 2 cut(s) 121, 234
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 119
FaiI YATR 5 cut(s) 50, 66, 117, 155, 246
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 46, 129, 218
FriOI GRGCYC 1 cut(s) 142
FseI GGCCGGCC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 3 cut(s) 20, 53, 158
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 69, 73, 185, 218
HapII CCGG 4 cut(s) 70, 81, 162, 186
Hin1II CATG 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 90, 97
HpaII CCGG 4 cut(s) 70, 81, 162, 186
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 94, 116
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 1 cut(s) 119
KroI GCCGGC 1 cut(s) 69
KroNI GCCGGC 1 cut(s) 71
Kzo9I GATC 2 cut(s) 121, 234
LpnPI CCDG 7 cut(s) 79, 83, 94, 167, 175, 199, 200
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 20, 53, 158
MaeII ACGT 1 cut(s) 172
MalI GATC 2 cut(s) 123, 236
MboI GATC 2 cut(s) 121, 234
MboII GAAGA 3 cut(s) 26, 131, 177
MhlI GDGCHC 1 cut(s) 142
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 6 cut(s) 31, 77, 144, 156, 186, 218
MroNI GCCGGC 1 cut(s) 69
MseI TTAA 1 cut(s) 195
MspI CCGG 4 cut(s) 70, 81, 162, 186
MwoI GCNNNNNNNGC 1 cut(s) 215
NaeI GCCGGC 1 cut(s) 71
NdeII GATC 2 cut(s) 121, 234
NgoMIV GCCGGC 1 cut(s) 69
NlaIII CATG 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 135
PagI TCATGA 1 cut(s) 115
PdiI GCCGGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 72
PspXI VCTCGAGB 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 171
RigI GGCCGGCC 1 cut(s) 73
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 2 cut(s) 121, 234
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 142
SetI ASST 6 cut(s) 21, 30, 136, 142, 175, 214
SfaNI GCATC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SspMI CTAG 3 cut(s) 20, 53, 158
SstI GAGCTC 1 cut(s) 142
TaaI ACNGT 1 cut(s) 258
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 136, 262
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 135
XspI CTAG 3 cut(s) 20, 53, 158
ZrmI AGTACT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.