Rh4BG252300

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004342
Physical Location & Seq
Forward (+)
42272115 .. 42285017
12903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG252300.1

Sequence Viewer

Length: 795 bp
ATGGGGAATGCTCAAGTTTCTGTTCCTCCTCCTACACGGCCTCCTCCAAGAACTGGTCCTAATTACACTCGTGGGGGGCATGATACCGATCGACATGCATATGCCAACATGAACAAGGATAATCGTGACCAAATTCCAGGAGTAGGAGTGCAGAAGCAAAGGCCCGTCATCACCTCTGATGAGGCTGCGCGACGCTACGGTGGGGGAAGCAAGTGCATACTGGACTCGGCCATAGCTTCAGTTTCAGTCAACCCTGTGTCTCTCTTTTGCTTTGATGAAGCAAATTTGAAGTACCTTGAGGAGGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTAAACTACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTCTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTACGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGTTGCTGTCGCTGTTCAAGTAGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATACTGATGATTCAACACTTCCACAGGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

264

Amino Acids

28.52

Weight (kDa)

4.81

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 101 - 256 1.8e-18 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 2 cut(s) 669, 695
AccII CGCG 1 cut(s) 190
AciI CCGC 1 cut(s) 590
AclWI GGATC 2 cut(s) 337, 469
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 2 cut(s) 132, 283
AcuI CTGAAG 2 cut(s) 222, 734
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 3 cut(s) 293, 557, 749
AfiI CCNNNNNNNGG 4 cut(s) 53, 143, 301, 527
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 6 cut(s) 289, 341, 440, 653, 759, 774
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 236, 533
AluI AGCT 2 cut(s) 236, 533
Alw26I GTCTC 2 cut(s) 264, 714
AlwI GGATC 2 cut(s) 337, 469
AoxI GGCC 3 cut(s) 38, 161, 228
ApeKI GCWGC 2 cut(s) 185, 380
ApoI RAATTY 2 cut(s) 132, 283
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 5 cut(s) 56, 162, 319, 515, 592
AsuHPI GGTGA 2 cut(s) 163, 572
AvaII GGWCC 4 cut(s) 56, 319, 515, 592
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 2 cut(s) 172, 392
BccI CCATC 2 cut(s) 392, 403
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 264, 714
BfaI CTAG 3 cut(s) 488, 542, 573
BisI GCNGC 2 cut(s) 186, 381
BlsI GCNGC 2 cut(s) 187, 382
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 4 cut(s) 56, 319, 515, 592
BmgT120I GGNCC 5 cut(s) 56, 162, 319, 515, 592
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 577
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 707
BsaJI CCNNGG 1 cut(s) 457
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 143, 301, 527
Bse1I ACTGG 2 cut(s) 58, 225
Bse3DI GCAATG 1 cut(s) 599
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 4 cut(s) 53, 143, 301, 527
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 2 cut(s) 58, 225
BseRI GAGGAG 4 cut(s) 18, 33, 314, 594
BseXI GCAGC 2 cut(s) 172, 392
BseYI CCCAGC 1 cut(s) 533
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 3 cut(s) 40, 163, 230
BsiEI CGRYCG 1 cut(s) 91
BslI CCNNNNNNNGG 4 cut(s) 53, 143, 301, 527
BsmAI GTCTC 2 cut(s) 264, 714
BsmBI CGTCTC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 40, 163, 230
Bsp143I GATC 3 cut(s) 88, 329, 461
BspACI CCGC 1 cut(s) 590
BspANI GGCC 3 cut(s) 40, 163, 230
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 190
BspPI GGATC 2 cut(s) 337, 469
BsrDI GCAATG 1 cut(s) 599
BsrI ACTGG 2 cut(s) 58, 225
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 88, 329, 461
BssNAI GTATAC 1 cut(s) 696
BssNI GRCGYC 1 cut(s) 707
BssSI CACGAG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 457
Bst1107I GTATAC 1 cut(s) 696
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 5 cut(s) 200, 323, 555, 560, 596
BstACI GRCGYC 1 cut(s) 707
BstDEI CTNAG 2 cut(s) 609, 722
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 592
BstFNI CGCG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 91, 332, 464
BstMAI GTCTC 2 cut(s) 264, 714
BstMBI GATC 3 cut(s) 88, 329, 461
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 440, 596, 610
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 2 cut(s) 98, 793
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 172, 392
BstX2I RGATCY 1 cut(s) 461
BstYI RGATCY 1 cut(s) 461
BstZ17I GTATAC 1 cut(s) 696
BsuRI GGCC 3 cut(s) 40, 163, 230
BtsCI GGATG 1 cut(s) 592
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 5 cut(s) 56, 162, 319, 515, 592
CpoI CGGWCCG 1 cut(s) 592
CseI GACGC 2 cut(s) 201, 696
Csp6I GTAC 3 cut(s) 292, 556, 748
CspI CGGWCCG 1 cut(s) 592
CviAII CATG 5 cut(s) 80, 95, 109, 363, 790
CviJI RGCY 8 cut(s) 40, 163, 185, 230, 236, 443, 533, 741
CviKI_1 RGCY 8 cut(s) 40, 163, 185, 230, 236, 443, 533, 741
CviQI GTAC 3 cut(s) 292, 556, 748
DdeI CTNAG 2 cut(s) 609, 722
DpnI GATC 3 cut(s) 90, 331, 463
DpnII GATC 3 cut(s) 88, 329, 461
DraI TTTAAA 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 457
Eco47I GGWCC 4 cut(s) 56, 319, 515, 592
Eco57I CTGAAG 2 cut(s) 222, 734
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 714
FaeI CATG 5 cut(s) 83, 98, 112, 366, 793
FatI CATG 5 cut(s) 79, 94, 108, 362, 789
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 2 cut(s) 669, 695
Fnu4HI GCNGC 2 cut(s) 186, 381
FokI GGATG 1 cut(s) 599
Fsp4HI GCNGC 2 cut(s) 186, 381
FspBI CTAG 3 cut(s) 488, 542, 573
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 186, 381
GsaI CCCAGC 1 cut(s) 537
HaeIII GGCC 3 cut(s) 40, 163, 230
HgaI GACGC 2 cut(s) 201, 696
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 5 cut(s) 83, 98, 112, 366, 793
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 3 cut(s) 224, 495, 770
HphI GGTGA 2 cut(s) 163, 572
Hpy166II GTNNAC 4 cut(s) 250, 563, 670, 696
Hpy188I TCNGA 3 cut(s) 178, 466, 714
Hpy188III TCNNGA 3 cut(s) 125, 521, 608
Hpy8I GTNNAC 4 cut(s) 250, 563, 670, 696
Hpy99I CGWCG 1 cut(s) 195
HpyCH4III ACNGT 5 cut(s) 200, 323, 555, 560, 596
HpyCH4V TGCA 5 cut(s) 98, 151, 216, 485, 599
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 596, 610
HpyF3I CTNAG 2 cut(s) 609, 722
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 5 cut(s) 83, 98, 112, 366, 793
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 3 cut(s) 88, 329, 461
LmnI GCTCC 1 cut(s) 530
Lsp1109I GCAGC 2 cut(s) 172, 392
LweI GCATC 1 cut(s) 577
MaeI CTAG 3 cut(s) 488, 542, 573
MaeIII GTNAC 2 cut(s) 125, 682
MalI GATC 3 cut(s) 90, 331, 463
MboI GATC 3 cut(s) 88, 329, 461
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 461
MluCI AATT 5 cut(s) 61, 132, 283, 345, 435
MlyI GAGTC 2 cut(s) 218, 504
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 440, 596, 610
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 88, 329, 461
NlaIII CATG 5 cut(s) 83, 98, 112, 366, 793
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 2 cut(s) 98, 793
PciI ACATGT 1 cut(s) 789
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 770
PflMI CCANNNNNTGG 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 187, 382
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 2 cut(s) 218, 503
PpsI GAGTC 2 cut(s) 218, 503
PscI ACATGT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 5 cut(s) 56, 162, 319, 515, 592
PsuI RGATCY 1 cut(s) 461
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 3 cut(s) 293, 557, 749
RsaNI GTAC 3 cut(s) 292, 556, 748
RseI CAYNNNNRTG 1 cut(s) 99
Rsr2I CGGWCCG 1 cut(s) 592
RsrII CGGWCCG 1 cut(s) 592
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 2 cut(s) 186, 381
Sau3AI GATC 3 cut(s) 88, 329, 461
Sau96I GGNCC 5 cut(s) 56, 162, 319, 515, 592
SchI GAGTC 2 cut(s) 218, 504
ScrFI CCNGG 1 cut(s) 138
SfaNI GCATC 1 cut(s) 577
SinI GGWCC 4 cut(s) 56, 319, 515, 592
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 12, 296
SmoI CTYRAG 2 cut(s) 12, 296
Sse9I AATT 5 cut(s) 61, 132, 283, 345, 435
SsiI CCGC 1 cut(s) 590
SspMI CTAG 3 cut(s) 488, 542, 573
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 5 cut(s) 200, 323, 555, 560, 596
TaqI TCGA 1 cut(s) 91
TasI AATT 5 cut(s) 61, 132, 283, 345, 435
TatI WGTACW 1 cut(s) 747
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 2 cut(s) 185, 380
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 125, 291, 351
Van91I CCANNNNNTGG 1 cut(s) 53
VpaK11BI GGWCC 4 cut(s) 56, 319, 515, 592
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 132, 283
XceI RCATGY 2 cut(s) 98, 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XmiI GTMKAC 2 cut(s) 669, 695
XspI CTAG 3 cut(s) 488, 542, 573
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.