Rroxscaffold_5G00365680

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004342
Physical Location & Seq
Forward (+)
47214108 .. 47214380
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365680.1

Sequence Viewer

Length: 273 bp
ATGGGGAATGTTCAAGTTTCTGTTCCTCCTCCTACGCGGCCTCCTCCAAGAACTGTTCCTAATTACACTCGTGGGGGACATGATACCGATCGGCATGCATATGCCAACACGAACATGGACAATCGTGACCAAATTCCAGGAGAAGGAGTGCAGAAGCAAAGATCCGTCATCAACTCTGATGAGGCTGCGCGACGCTACGGTGGGGTAGTCATTACTGAAATATACGGTACTGCTACGAATAAAACTGCGATCACTCGTAATTGGCGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

90

Amino Acids

10.05

Weight (kDa)

9.86

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 37, 190
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 132
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 136
AlwI GGATC 1 cut(s) 156
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 132
AspLEI GCGC 1 cut(s) 190
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 138
BisI GCNGC 2 cut(s) 38, 186
BlsI GCNGC 2 cut(s) 39, 187
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 87
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 138
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 18, 33
BseXI GCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 2 cut(s) 37, 190
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 88, 161, 249
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 40
BspFNI CGCG 2 cut(s) 37, 190
BspPI GGATC 1 cut(s) 156
BssMI GATC 3 cut(s) 88, 161, 249
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 55, 200, 227
BstC8I GCNNGC 1 cut(s) 96
BstFNI CGCG 2 cut(s) 37, 190
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 91, 164, 252
BstMBI GATC 3 cut(s) 88, 161, 249
BstMCI CGRYCG 1 cut(s) 91
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 2 cut(s) 37, 190
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 190
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 80, 95, 115
CviJI RGCY 2 cut(s) 40, 185
CviKI_1 RGCY 2 cut(s) 40, 185
CviQI GTAC 1 cut(s) 228
DpnI GATC 3 cut(s) 90, 163, 251
DpnII GATC 3 cut(s) 88, 161, 249
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 3 cut(s) 83, 98, 118
FaiI YATR 6 cut(s) 81, 96, 100, 102, 116, 223
FaqI GGGAC 1 cut(s) 90
FatI CATG 3 cut(s) 79, 94, 114
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 38, 186
Fsp4HI GCNGC 2 cut(s) 38, 186
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 38, 186
HaeIII GGCC 1 cut(s) 40
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 190
Hin1II CATG 3 cut(s) 83, 98, 118
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 3 cut(s) 55, 200, 227
HpyCH4V TGCA 2 cut(s) 98, 151
Hsp92II CATG 3 cut(s) 83, 98, 118
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 3 cut(s) 88, 161, 249
LpnPI CCDG 2 cut(s) 123, 150
Lsp1109I GCAGC 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 90, 163, 251
MboI GATC 3 cut(s) 88, 161, 249
MflI RGATCY 1 cut(s) 161
MluCI AATT 3 cut(s) 61, 132, 259
MnlI CCTC 5 cut(s) 36, 39, 51, 54, 175
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 271
MslI CAYNNNNRTG 2 cut(s) 99, 113
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 2 cut(s) 37, 190
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 88, 161, 249
NlaIII CATG 3 cut(s) 83, 98, 118
NmuCI GTSAC 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 2 cut(s) 39, 187
Ple19I CGATCG 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 161
PvuI CGATCG 1 cut(s) 91
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 99, 113
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 2 cut(s) 38, 186
Sau3AI GATC 3 cut(s) 88, 161, 249
ScrFI CCNGG 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 99, 113
SphI GCATGC 1 cut(s) 98
Sse9I AATT 3 cut(s) 61, 132, 259
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 3 cut(s) 55, 200, 227
TasI AATT 3 cut(s) 61, 132, 259
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 154
XapI RAATTY 1 cut(s) 132
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.