Rorug04G0187800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004342
Physical Location & Seq
Reverse (-)
32649568 .. 32650969
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0187800.1

Sequence Viewer

Length: 978 bp
ATGGAATATTATTTCACCCTCACATTAGTACTTTGTCTGCCCCCCATTTTCTTCGTTCTCTTTCGCAGATGGTCCTCCGTTAATACCAAAAATCAACCACCTTCTCCACCAAAGCTTCCTTTCCTTGGGAACCTTCACCAACTAGACTCACATCCTCATCGCTCACTTCAAGCCTTGGCTCATTACCATGGCCCCCTCATGCTCCTCCATTTCGGAAGTGTCCCAGTCCTCGTTGTCTCCTCGGCTGAGGCTGCGCGTGAGGTCTTGAAAACACATGATCTCACATTCGCCAGCAGACCAACGTCCACCGTCTTTAAGAAGCTTTTCTACAATTGCAAAGACATGGCGTCTGCACCTTATGGTGAGTATTGGAGGCAGTTGAGGAGTATATGTGTTTCAAATCTTTTGAGCACCAAAATGGTTCGCTCTTTTCGTGCCGTGAGAGAAGAGGAAACAAAATTCATGATCTCCGGGATAGAACAATCATGTATGTCCTCCTCTTCAAAGTCATCAGTCGTGAATTTAAGAGAAAAGCTTGTGACGCTTACTATTGATGTCACCTGTAGAGTGACTACGGGGAGGAAGTACAATAACATCGTTGGGGAAGATGGTAAAATAGTATTGTTTAAGGATCTTTTAGGGGAGTTTATTGAGTTATTAGGAGGCATCTACATCGGAGACTATATCCCATGGCTCGCTTGGTTAACTCGTGTCAATGGTTTGGACTCTAAATTAGACAAGGTGGCTAAACAGTTTGATGACCTTTTAGATAGAGTGATTCAAGATCATATCGAGCAACGTTCCAAGAGTGGAAACATTAAAGGGAATATGAATCATACGGATGATCAGGACGAGAATGGCCAAAAGGACTTCGTGGACGTTTTACTTGGGATTCAAGAAGACAGCTCATCATCAATTGGTTGCCCTATTGATAGAGTCACCGTGAAGGCTCTCATCATGTGTTCACTTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

325

Amino Acids

36.65

Weight (kDa)

8.1

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 299 4.7e-28 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AclI AACGTT 1 cut(s) 799
AclWI GGATC 1 cut(s) 639
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 2 cut(s) 458, 520
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 2 cut(s) 30, 587
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 6 cut(s) 170, 268, 399, 504, 782, 896
AhdI GACNNNNNGTC 1 cut(s) 346
AluBI AGCT 4 cut(s) 115, 322, 535, 906
AluI AGCT 4 cut(s) 115, 322, 535, 906
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 241, 672
AlwI GGATC 1 cut(s) 639
AoxI GGCC 2 cut(s) 190, 859
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 2 cut(s) 458, 520
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 72, 191
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 5 cut(s) 7, 128, 374, 550, 931
AvaII GGWCC 1 cut(s) 72
BalI TGGCCA 1 cut(s) 861
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 63, 602
BceAI ACGGC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BclI TGATCA 1 cut(s) 844
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 241, 672
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 562
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 72
BmeRI GACNNNNNGTC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 72, 191
BmiI GGNNCC 2 cut(s) 131, 193
BmrFI CCNGG 1 cut(s) 472
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 675
BmuI ACTGGG 1 cut(s) 218
BoxI GACNNNNGTC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 472
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 5 cut(s) 124, 174, 187, 240, 689
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 5 cut(s) 124, 174, 187, 240, 689
BseGI GGATG 2 cut(s) 151, 847
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 4 cut(s) 194, 229, 397, 487
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 192, 861
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 241, 672
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 192, 861
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 5 cut(s) 277, 465, 631, 784, 844
Bsp19I CCATGG 2 cut(s) 187, 689
BspANI GGCC 2 cut(s) 192, 861
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 131, 193
BspPI GGATC 1 cut(s) 639
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 124, 174, 187, 240, 689
BssMI GATC 5 cut(s) 277, 465, 631, 784, 844
BssNI GRCGYC 1 cut(s) 347
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 4 cut(s) 124, 174, 187, 689
Bst2BI CACGAG 1 cut(s) 708
Bst4CI ACNGT 3 cut(s) 310, 753, 943
Bst6I CTCTTC 2 cut(s) 441, 505
BstACI GRCGYC 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 292, 696
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 2 cut(s) 187, 689
BstF5I GGATG 2 cut(s) 151, 847
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 5 cut(s) 280, 468, 634, 787, 847
BstMAI GTCTC 2 cut(s) 241, 672
BstMBI GATC 5 cut(s) 277, 465, 631, 784, 844
BstMWI GCNNNNNNNGC 2 cut(s) 251, 541
BstPAI GACNNNNGTC 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 1 cut(s) 562
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuRI GGCC 2 cut(s) 192, 861
BtgI CCRYGG 2 cut(s) 187, 689
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 2 cut(s) 151, 847
Cac8I GCNNGC 2 cut(s) 292, 696
CciI TCATGA 1 cut(s) 462
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 72, 191
CseI GACGC 2 cut(s) 336, 550
Csp6I GTAC 2 cut(s) 29, 586
CviAII CATG 8 cut(s) 188, 199, 275, 343, 463, 486, 690, 958
CviQI GTAC 2 cut(s) 29, 586
DdeI CTNAG 1 cut(s) 246
DpnI GATC 5 cut(s) 279, 467, 633, 786, 846
DpnII GATC 5 cut(s) 277, 465, 631, 784, 844
DriI GACNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 441, 505
Eam1105I GACNNNNNGTC 1 cut(s) 346
EarI CTCTTC 2 cut(s) 441, 505
Eco130I CCWWGG 4 cut(s) 124, 174, 187, 689
Eco47I GGWCC 1 cut(s) 72
EcoT14I CCWWGG 4 cut(s) 124, 174, 187, 689
ErhI CCWWGG 4 cut(s) 124, 174, 187, 689
FaeI CATG 8 cut(s) 191, 202, 278, 346, 466, 489, 693, 961
FaqI GGGAC 1 cut(s) 206
FatI CATG 8 cut(s) 187, 198, 274, 342, 462, 485, 689, 957
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 2 cut(s) 138, 854
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 192, 861
HapII CCGG 1 cut(s) 471
HgaI GACGC 2 cut(s) 336, 550
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 8 cut(s) 191, 202, 278, 346, 466, 489, 693, 961
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 3 cut(s) 113, 320, 533
HinfI GANTC 6 cut(s) 146, 725, 778, 832, 892, 936
HpaI GTTAAC 1 cut(s) 705
HpaII CCGG 1 cut(s) 471
HphI GGTGA 5 cut(s) 7, 128, 374, 550, 931
Hpy166II GTNNAC 4 cut(s) 306, 705, 877, 965
Hpy188I TCNGA 2 cut(s) 215, 677
Hpy188III TCNNGA 6 cut(s) 265, 463, 517, 782, 848, 896
Hpy8I GTNNAC 4 cut(s) 306, 705, 877, 965
HpyAV CCTTC 3 cut(s) 111, 143, 940
HpyCH4III ACNGT 3 cut(s) 310, 753, 943
HpyCH4IV ACGT 3 cut(s) 302, 799, 879
HpyCH4V TGCA 2 cut(s) 336, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 541
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 3 cut(s) 302, 799, 879
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 8 cut(s) 191, 202, 278, 346, 466, 489, 693, 961
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 844
KspAI GTTAAC 1 cut(s) 705
Kzo9I GATC 5 cut(s) 277, 465, 631, 784, 844
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 237, 304, 484, 574, 833
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 675
MaeI CTAG 1 cut(s) 143
MaeII ACGT 3 cut(s) 302, 799, 879
MaeIII GTNAC 4 cut(s) 538, 556, 568, 937
MalI GATC 5 cut(s) 279, 467, 633, 786, 846
MboI GATC 5 cut(s) 277, 465, 631, 784, 844
MboII GAAGA 5 cut(s) 43, 458, 492, 617, 911
MfeI CAATTG 2 cut(s) 331, 915
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 413
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 5 cut(s) 331, 458, 520, 731, 915
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 3 cut(s) 140, 719, 945
Mox20I TGGCCA 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 323
MscI TGGCCA 1 cut(s) 861
MseI TTAA 6 cut(s) 81, 315, 524, 627, 704, 819
MslI CAYNNNNRTG 3 cut(s) 186, 416, 840
Msp20I TGGCCA 1 cut(s) 861
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 472
MunI CAATTG 2 cut(s) 331, 915
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 251, 541
NciI CCSGG 1 cut(s) 472
NcoI CCATGG 2 cut(s) 187, 689
NdeII GATC 5 cut(s) 277, 465, 631, 784, 844
NlaIII CATG 8 cut(s) 191, 202, 278, 346, 466, 489, 693, 961
NlaIV GGNNCC 2 cut(s) 131, 193
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 4 cut(s) 538, 556, 568, 937
PagI TCATGA 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 3 cut(s) 778, 832, 892
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 3 cut(s) 140, 719, 944
PpsI GAGTC 3 cut(s) 140, 719, 944
PshAI GACNNNNGTC 1 cut(s) 301
Psp1406I AACGTT 1 cut(s) 799
PspN4I GGNNCC 2 cut(s) 131, 193
PspPI GGNCC 2 cut(s) 72, 191
PsuI RGATCY 1 cut(s) 631
RsaI GTAC 2 cut(s) 30, 587
RsaNI GTAC 2 cut(s) 29, 586
RseI CAYNNNNRTG 3 cut(s) 186, 416, 840
SaqAI TTAA 6 cut(s) 81, 315, 524, 627, 704, 819
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 5 cut(s) 277, 465, 631, 784, 844
Sau96I GGNCC 2 cut(s) 72, 191
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 3 cut(s) 140, 719, 945
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 1 cut(s) 675
SfcI CTRYAG 1 cut(s) 562
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 3 cut(s) 186, 416, 840
Sse9I AATT 5 cut(s) 331, 458, 520, 731, 915
SspI AATATT 1 cut(s) 8
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 4 cut(s) 124, 174, 187, 689
TaaI ACNGT 3 cut(s) 310, 753, 943
TaiI ACGT 3 cut(s) 305, 802, 882
TaqI TCGA 1 cut(s) 792
TasI AATT 5 cut(s) 331, 458, 520, 731, 915
TatI WGTACW 2 cut(s) 28, 585
TfiI GAWTC 3 cut(s) 778, 832, 892
Tru1I TTAA 6 cut(s) 81, 315, 524, 627, 704, 819
Tru9I TTAA 6 cut(s) 81, 315, 524, 627, 704, 819
TseFI GTSAC 4 cut(s) 538, 556, 568, 937
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 4 cut(s) 538, 556, 568, 937
TspDTI ATGAA 2 cut(s) 451, 845
TspGWI ACGGA 2 cut(s) 67, 854
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 458, 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 143
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.