Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Reverse (-)

13473516 .. 13475371

Gene Structure 1856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGGTCAAAGACGGAGATGATGGAGAGAGACGCAATGGCTACGGTGGCTCCCTATGCGCCGGTCACTTACCATCGCCGTGCTCGTGTTGACTTGGATGATAGACTTCCTAAACCTTATATGCCAAGAGCATTGCAAGCACCAGACAGAGAACACCCGTACGGAACTCCAGGCCATAAGAATTACGGACTTAGTGTTCTTCAACAGCATGTCTCCTTCTTCGATATCGATGATAATGGCATCATTTACCCTTGGGAGACCTACTCTGGACTGCGAATGCTTGGTTTCAATATCATTGGGTCGCTTATAATAGCCGCTGTTATCAACCTGACCCTTAGCTATGCCACTCTTCCGGGGTGGTTACCTTCACCTTTCTTCCCTATATACATACACAACATACACAAGTCAAAGCATGGAAGTGATTCAAAAACATATGACAATGAAGGAAGGTTTATGCCGGTGAATCTTGAGTTGATATTTAGCAAATATGCGAAAACCTTGCCAGACAAGTTGAGTCTTGGAGAACTATGGGAGATGACAGAAGGAAACCGTGACGCTTGGGACATTTTTGGATGGATCGCAGGCAAAATAGAGTGGGGACTGTTGTACTTGCTAGCAAGGGATGAAGAAGGGTTTTTGTCAAAAGAAGCTATTAGGCGGTGTTTCGATGGAAGCTTGTTCGAGTACTGTGCCAAAATCTACGCTGGTATCAGTGAAGACAAGACAGCATACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

245

Amino Acids

28.04

Weight (kDa)

5.81

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	64 - 230	6.1e-76	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AciI	CCGC	2 cut(s)	315, 658
AclWI	GGATC	1 cut(s)	584
AfaI	GTAC	3 cut(s)	161, 608, 686
AgsI	TTSAA	3 cut(s)	203, 289, 426
AjnI	CCWGG	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	3 cut(s)	339, 650, 675
AluI	AGCT	3 cut(s)	339, 650, 675
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	3 cut(s)	24, 217, 251
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	2 cut(s)	360, 472
AsuNHI	GCTAGC	1 cut(s)	613
BaeI	ACNNNNGTAYC	2 cut(s)	691, 724
BauI	CACGAG	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	1 cut(s)	85
BccI	CCATC	4 cut(s)	16, 81, 567, 662
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	4 cut(s)	481, 515, 671, 705
BciT130I	CCWGG	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	3 cut(s)	24, 217, 251
BfaI	CTAG	1 cut(s)	614
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	171, 354
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	171, 354
BmsI	GCATC	1 cut(s)	249
BmtI	GCTAGC	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	251, 353
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bse118I	RCCGGY	2 cut(s)	61, 457
Bse3DI	GCAATG	2 cut(s)	42, 131
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	251, 353
BseGI	GGATG	3 cut(s)	103, 578, 628
BseMI	GCAATG	2 cut(s)	42, 131
BshFI	GGCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	62, 353, 458
BsiWI	CGTACG	1 cut(s)	159
BslFI	GGGAC	2 cut(s)	575, 612
BsmAI	GTCTC	3 cut(s)	24, 217, 251
BsmBI	CGTCTC	1 cut(s)	24
BsmFI	GGGAC	2 cut(s)	575, 612
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	576
BspACI	CCGC	2 cut(s)	315, 658
BspANI	GGCC	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	51
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	42, 131
BsrFI	RCCGGY	2 cut(s)	61, 457
BssAI	RCCGGY	2 cut(s)	61, 457
BssECI	CCNNGG	2 cut(s)	251, 353
BssMI	GATC	1 cut(s)	576
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	46, 551, 603, 689
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	138, 583, 615
BstDEI	CTNAG	2 cut(s)	191, 335
BstEII	GGTNACC	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	103, 578, 628
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	579
BstMAI	GTCTC	3 cut(s)	24, 217, 251
BstMBI	GATC	1 cut(s)	576
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 137
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	169, 352
BstV2I	GAAGAC	1 cut(s)	723
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	103, 578, 628
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	3 cut(s)	138, 583, 615
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	2 cut(s)	61, 457
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	2 cut(s)	41, 563
Csp6I	GTAC	3 cut(s)	160, 607, 685
CviAII	CATG	2 cut(s)	209, 413
CviJI	RGCY	7 cut(s)	41, 50, 174, 314, 339, 650, 675
CviKI_1	RGCY	7 cut(s)	41, 50, 174, 314, 339, 650, 675
CviQI	GTAC	3 cut(s)	160, 607, 685
DdeI	CTNAG	2 cut(s)	191, 335
DpnI	GATC	1 cut(s)	578
DpnII	GATC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	360
EcoO65I	GGTNACC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	2 cut(s)	212, 416
FaqI	GGGAC	2 cut(s)	575, 612
FatI	CATG	2 cut(s)	208, 412
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	3 cut(s)	110, 585, 635
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	3 cut(s)	62, 353, 458
HgaI	GACGC	2 cut(s)	41, 563
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	212, 416
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	3 cut(s)	422, 463, 514
HpaII	CCGG	3 cut(s)	62, 353, 458
HphI	GGTGA	2 cut(s)	360, 472
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	267, 467
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	6 cut(s)	226, 375, 437, 441, 536, 623
HpyCH4III	ACNGT	4 cut(s)	46, 551, 603, 689
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 137
HpyF3I	CTNAG	2 cut(s)	191, 335
Hsp92II	CATG	2 cut(s)	212, 416
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	55
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	614
MaeIII	GTNAC	3 cut(s)	64, 360, 551
MalI	GATC	1 cut(s)	578
MboI	GATC	1 cut(s)	576
MboII	GAAGA	6 cut(s)	191, 211, 341, 367, 638, 728
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	421
MslI	CAYNNNNRTG	2 cut(s)	78, 417
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	3 cut(s)	62, 353, 458
MspR9I	CCNGG	2 cut(s)	171, 354
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 137
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	1 cut(s)	576
NheI	GCTAGC	1 cut(s)	613
NlaIII	CATG	2 cut(s)	212, 416
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	64, 551
NspI	RCATGY	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	422, 463
Pfl23II	CGTACG	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	169
PspLI	CGTACG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	51
RsaI	GTAC	3 cut(s)	161, 608, 686
RsaNI	GTAC	3 cut(s)	160, 607, 685
RseI	CAYNNNNRTG	2 cut(s)	78, 417
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	576
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	171, 354
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	78, 417
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	315, 658
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	2 cut(s)	169, 352
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	4 cut(s)	46, 551, 603, 689
TaqI	TCGA	4 cut(s)	222, 228, 666, 681
TasI	AATT	1 cut(s)	181
TatI	WGTACW	2 cut(s)	606, 684
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	422, 463
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	2 cut(s)	64, 551
Tsp45I	GTSAC	2 cut(s)	64, 551
TspDTI	ATGAA	2 cut(s)	456, 639
TspGWI	ACGGA	3 cut(s)	29, 177, 201
TspRI	CASTG	1 cut(s)	718
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	1 cut(s)	614
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.