Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

11972890 .. 12074677

Gene Structure 101788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG056600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCTTCCAGAGCCAGGGGTCGAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAAAAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACATCTCCTCTGAGTCCTCTCCACAAGGGCACCACGTCGAAAGGACCGAAGATTTCCACTTCTCCTCTCCACAAGGGCACCAAGTCAGAAGAATCCAAGTTATCCGCTGCATCTTCCCCCTCGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGGCAGTAGAACCAGAGATTTACACAGTGTCGGTGCCTTCTGAATGCGACATGGTCGAGATGGTCATAGCTCCATTTCCTCGTGTTGAGCGTCCCGACTCCGATTTTGGTTATGATGGTAGCGATGTAGAACCCCTACTGTCACTCCCAGGAGTCGGAGATTTCGGTCCTCCTTCGCCGGATGTAATCTATGATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.78

Weight (kDa)

9.67

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	95, 143, 200, 248, 379
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	131, 276
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	15, 500
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	2 cut(s)	14, 493
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	51, 326
ApeKI	GCWGC	2 cut(s)	46, 278
ApoI	RAATTY	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspS9I	GGNCC	4 cut(s)	158, 215, 327, 512
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	3 cut(s)	158, 215, 512
BaeGI	GKGCMC	4 cut(s)	98, 146, 203, 251
BanI	GGYRCC	5 cut(s)	95, 143, 200, 248, 379
BauI	CACGAG	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	33, 265
BccI	CCATC	2 cut(s)	400, 455
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	2 cut(s)	16, 495
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	47, 279
BlsI	GCNGC	2 cut(s)	48, 280
Bme1390I	CCNGG	2 cut(s)	16, 495
Bme18I	GGWCC	3 cut(s)	158, 215, 512
BmeT110I	CYCGRG	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	4 cut(s)	158, 215, 327, 512
BmiI	GGNNCC	5 cut(s)	97, 145, 202, 250, 381
BmrFI	CCNGG	2 cut(s)	16, 495
BmsI	GCATC	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	15, 291, 493, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 500
BseBI	CCWGG	2 cut(s)	16, 495
BseDI	CCNNGG	4 cut(s)	15, 291, 493, 542
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	2 cut(s)	15, 500
BseMII	CTCAG	1 cut(s)	173
BseRI	GAGGAG	2 cut(s)	168, 225
BseSI	GKGCMC	4 cut(s)	98, 146, 203, 251
BseXI	GCAGC	2 cut(s)	33, 265
BshFI	GGCC	2 cut(s)	53, 328
BshNI	GGYRCC	5 cut(s)	95, 143, 200, 248, 379
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	15, 500
BsmFI	GGGAC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	53, 328
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	4 cut(s)	98, 146, 203, 251
Bsp143I	GATC	1 cut(s)	538
BspACI	CCGC	2 cut(s)	131, 276
BspANI	GGCC	2 cut(s)	53, 328
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	5 cut(s)	97, 145, 202, 250, 381
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	533
BspT107I	GGYRCC	5 cut(s)	95, 143, 200, 248, 379
BsrBI	CCGCTC	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	15, 291, 493, 542
BssMI	GATC	1 cut(s)	538
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	542
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	16, 495
Bst4CI	ACNGT	2 cut(s)	373, 486
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	532
BstKTI	GATC	1 cut(s)	541
BstMBI	GATC	1 cut(s)	538
BstNI	CCWGG	2 cut(s)	16, 495
BstSCI	CCNGG	2 cut(s)	14, 493
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	4 cut(s)	98, 146, 203, 251
BstV1I	GCAGC	2 cut(s)	33, 265
BsuRI	GGCC	2 cut(s)	53, 328
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	158, 215, 327, 512
CseI	GACGC	1 cut(s)	425
CviAII	CATG	2 cut(s)	311, 397
CviJI	RGCY	6 cut(s)	14, 53, 61, 103, 328, 416
CviKI_1	RGCY	6 cut(s)	14, 53, 61, 103, 328, 416
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	542
Eco47I	GGWCC	3 cut(s)	158, 215, 512
Eco88I	CYCGRG	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	14, 493
EcoT14I	CCWWGG	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	2 cut(s)	314, 400
FaiI	YATR	5 cut(s)	312, 398, 413, 459, 537
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	310, 396
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	47, 279
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	47, 279
GluI	GCNGC	2 cut(s)	47, 279
HaeIII	GGCC	2 cut(s)	53, 328
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	314, 400
HinfI	GANTC	6 cut(s)	28, 36, 184, 263, 443, 498
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	5 cut(s)	183, 259, 388, 448, 503
Hpy188III	TCNNGA	5 cut(s)	9, 73, 338, 403, 440
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	15, 18, 135, 393, 528
HpyCH4III	ACNGT	2 cut(s)	373, 486
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	49, 281
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	314, 400
Kzo9I	GATC	1 cut(s)	538
LmnI	GCTCC	1 cut(s)	421
Lsp1109I	GCAGC	2 cut(s)	33, 265
LweI	GCATC	1 cut(s)	290
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	3 cut(s)	296, 338, 486
MalI	GATC	1 cut(s)	540
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	1 cut(s)	538
MboII	GAAGA	4 cut(s)	175, 232, 272, 276
MhlI	GDGCHC	4 cut(s)	98, 146, 203, 251
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	3 cut(s)	193, 437, 507
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	72, 189, 198, 246, 301, 435, 525
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	16, 495
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	16, 495
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	2 cut(s)	314, 400
NlaIV	GGNNCC	5 cut(s)	97, 145, 202, 250, 381
NmuCI	GTSAC	3 cut(s)	296, 338, 486
PcsI	WCGNNNNNNNCGW	3 cut(s)	28, 215, 433
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	3 cut(s)	28, 36, 263
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	48, 280
PleI	GAGTC	3 cut(s)	192, 437, 506
PpsI	GAGTC	3 cut(s)	192, 437, 506
Psp6I	CCWGG	2 cut(s)	14, 493
PspGI	CCWGG	2 cut(s)	14, 493
PspN4I	GGNNCC	5 cut(s)	97, 145, 202, 250, 381
PspPI	GGNCC	4 cut(s)	158, 215, 327, 512
PstI	CTGCAG	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	398
SatI	GCNGC	2 cut(s)	47, 279
Sau3AI	GATC	1 cut(s)	538
Sau96I	GGNCC	4 cut(s)	158, 215, 327, 512
SchI	GAGTC	3 cut(s)	193, 437, 507
ScrFI	CCNGG	2 cut(s)	16, 495
SduI	GDGCHC	4 cut(s)	98, 146, 203, 251
SetI	ASST	2 cut(s)	209, 418
SfaNI	GCATC	1 cut(s)	290
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	158, 215, 512
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	2 cut(s)	131, 276
SspI	AATATT	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	14, 493
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	373, 486
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	22, 209, 402
TaqII	GACCGA	3 cut(s)	175, 232, 500
TasI	AATT	1 cut(s)	333
TfiI	GAWTC	3 cut(s)	28, 36, 263
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	3 cut(s)	296, 338, 486
TseI	GCWGC	2 cut(s)	46, 278
Tsp45I	GTSAC	3 cut(s)	296, 338, 486
TspRI	CASTG	1 cut(s)	378
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	158, 215, 512
XapI	RAATTY	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.