Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Reverse (-)

55824277 .. 55831700

Gene Structure 7424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009645

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTTCCAGAGCCAGGGGTCCAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAAAAAGTCTGGGGGCACCAAGTTGAAAGGACCGAAGACTTCCACTTCTCCTCTCCACAAGGGCACCAAGTCAGAAGAATCCAAGTTATCCGCTGCACCTTCCCCCTCGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGCCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTGCTGAATTGGACATGGTCAAGCTGGTCATAGCTCCATTTCCTCGTGTTAAGCGTCCCGACTCCGATTTTGTTGATGATGGTAGCGATGTGGAACCCCTACTGTCACTCCCAGAATTCGGAGATTTCCCTCTTTCTTCGCCGGATATATTCTATGGTCCTCGGTTTTCGCCAGCAAACATTGAGCTCATGTTTAGCAAGTATGCTCGTACGGTTCCTGACAAGTTCACTCTAGGAGAGCTTTGGGACATGACTGAGGGTAACAGAGTTTCATATGACTTCTTTGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

190

Amino Acids

21.13

Weight (kDa)

9.21

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	147 - 189	1.2e-08	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 143
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	228, 392
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	2 cut(s)	15, 395
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	4 cut(s)	301, 311, 463, 517
AluI	AGCT	4 cut(s)	301, 311, 463, 517
Alw21I	GWGCWC	1 cut(s)	465
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	187
AoxI	GGCC	2 cut(s)	51, 221
ApeKI	GCWGC	2 cut(s)	46, 173
ApoI	RAATTY	2 cut(s)	228, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	4 cut(s)	20, 110, 222, 434
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	3 cut(s)	20, 110, 434
BaeGI	GKGCMC	2 cut(s)	98, 146
BanI	GGYRCC	2 cut(s)	95, 143
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	33, 160
BccI	CCATC	2 cut(s)	350, 558
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	47, 174
BlsI	GCNGC	2 cut(s)	48, 175
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	3 cut(s)	20, 110, 434
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	4 cut(s)	20, 110, 222, 434
BmiI	GGNNCC	5 cut(s)	21, 97, 145, 372, 492
BmrFI	CCNGG	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	15, 23, 186, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 395
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	4 cut(s)	15, 23, 186, 437
BseGI	GGATG	1 cut(s)	569
BseLI	CCNNNNNNNGG	2 cut(s)	15, 395
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	120
BseSI	GKGCMC	2 cut(s)	98, 146
BseXI	GCAGC	2 cut(s)	33, 160
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	53, 223
BshNI	GGYRCC	2 cut(s)	95, 143
BsiHKAI	GWGCWC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	419
BsiWI	CGTACG	1 cut(s)	485
BslFI	GGGAC	2 cut(s)	318, 536
BslI	CCNNNNNNNGG	2 cut(s)	15, 395
BsmFI	GGGAC	2 cut(s)	318, 536
BsnI	GGCC	2 cut(s)	53, 223
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	3 cut(s)	98, 146, 465
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	53, 223
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	5 cut(s)	21, 97, 145, 372, 492
BspMAI	CTGCAG	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	95, 143
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	4 cut(s)	15, 23, 186, 437
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	268, 381, 490
BstC8I	GCNNGC	4 cut(s)	51, 242, 279, 450
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	569
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	2 cut(s)	98, 146
BstV1I	GCAGC	2 cut(s)	33, 160
BstV2I	GAAGAC	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	53, 223
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	273, 279
Cac8I	GCNNGC	4 cut(s)	51, 242, 279, 450
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	4 cut(s)	20, 110, 222, 434
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	4 cut(s)	206, 292, 466, 526
CviJI	RGCY	9 cut(s)	14, 53, 61, 223, 244, 301, 311, 463, 517
CviKI_1	RGCY	9 cut(s)	14, 53, 61, 223, 244, 301, 311, 463, 517
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	3 cut(s)	20, 110, 434
Eco53kI	GAGCTC	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	463
EcoRI	GAATTC	2 cut(s)	228, 392
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	209, 295, 469, 529
FaqI	GGGAC	2 cut(s)	318, 536
FatI	CATG	4 cut(s)	205, 291, 465, 525
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	47, 174
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	47, 174
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	2 cut(s)	47, 174
HaeIII	GGCC	2 cut(s)	53, 223
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	209, 295, 469, 529
HinfI	GANTC	4 cut(s)	28, 36, 158, 338
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	211, 504
Hpy188I	TCNGA	3 cut(s)	154, 343, 398
Hpy188III	TCNNGA	5 cut(s)	9, 73, 233, 335, 494
Hpy8I	GTNNAC	2 cut(s)	211, 504
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	3 cut(s)	268, 381, 490
HpyCH4V	TGCA	2 cut(s)	49, 176
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	4 cut(s)	209, 295, 469, 529
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	33, 160
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	4 cut(s)	191, 233, 381, 536
MboII	GAAGA	3 cut(s)	127, 167, 405
MhlI	GDGCHC	3 cut(s)	98, 146, 465
MluCI	AATT	3 cut(s)	228, 284, 392
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	7 cut(s)	72, 141, 196, 330, 417, 447, 526
MseI	TTAA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	550
NlaIII	CATG	4 cut(s)	209, 295, 469, 529
NlaIV	GGNNCC	5 cut(s)	21, 97, 145, 372, 492
NmuCI	GTSAC	3 cut(s)	191, 233, 381
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	28, 36, 158
Pfl23II	CGTACG	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	48, 175
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspLI	CGTACG	1 cut(s)	485
PspN4I	GGNNCC	5 cut(s)	21, 97, 145, 372, 492
PspPI	GGNCC	4 cut(s)	20, 110, 222, 434
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	47, 174
Sau96I	GGNCC	4 cut(s)	20, 110, 222, 434
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	3 cut(s)	98, 146, 465
SetI	ASST	5 cut(s)	181, 303, 313, 465, 519
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	20, 110, 434
Sse9I	AATT	3 cut(s)	228, 284, 392
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	3 cut(s)	268, 381, 490
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	3 cut(s)	228, 284, 392
TfiI	GAWTC	3 cut(s)	28, 36, 158
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	273, 279
TseFI	GTSAC	3 cut(s)	191, 233, 381
TseI	GCWGC	2 cut(s)	46, 173
Tsp45I	GTSAC	3 cut(s)	191, 233, 381
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	2 cut(s)	273, 279
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	3 cut(s)	20, 110, 434
XapI	RAATTY	2 cut(s)	228, 392
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.