Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

21298016 .. 21300005

Gene Structure 1990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1220000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGCGAGTGCTGTGATAGAGAATGAAGCATTGGCAACAGAAGCTCCATATGCACCTGTGACTATTGAGAGGAGAGTCAGGAGTGACTTGGAAACCAAACTTCCTAAACCATATATGCCCAGAGCATTGGTTGCTCCAGACACAAACCATCCAACAGGAACAGTTGGCCATCAGCACCGTAACATGAGTGTTCTTCAGCAGCATATTGCGTTTTTCGACCAGGACGACAATGGCATCGTCTATCCATGGGAAACTTTTACTGGATGTCGGGCCATAGGTTTCAACCCAATCGTCGCCGTTTTTATGTCTGTTCTTATCAATGGGGCTATGAGTTATCCCACTCTGCCTGGGTGGATTCCTTCTCCTTTCTTTCCCATATACATCTACAACATTCACAAGGCAAAGCACGGTAGCGATTCCGGGACATATGACACAGAAGGAAGGTATAGCCCAGCCAACATTGAGAACATGTTTAGTAAGTATGCCCATACTGTGCCTGACAAGTTCACGCTGGGAGAGCTTTGGGCCATGACCGAGGGGAACAGAGTTGCCTTTGATTTCTTTGGATGGATCACAAGTAAGCTGGAATGGGGGCTATTGTATGTGCTTGCTAGGGACGAGGAGGGTTTGCTGTCGAAAGAAGCCGTTAGACGCTGCTTCGATGGTAGCTTGTTCGATTATTGCGCTAAGATGAATACCGTCGGTAGAGCCAAGATGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

242

Amino Acids

27.03

Weight (kDa)

5.97

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	62 - 229	9.9e-76	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	720
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	222, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	4 cut(s)	47, 523, 586, 672
AluI	AGCT	4 cut(s)	47, 523, 586, 672
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	3 cut(s)	169, 273, 528
ApeKI	GCWGC	3 cut(s)	5, 202, 657
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	273, 528
AsuC2I	CCSGG	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	214, 644
BccI	CCATC	5 cut(s)	159, 180, 564, 659, 712
BceAI	ACGGC	2 cut(s)	284, 632
BciT130I	CCWGG	2 cut(s)	224, 351
BcnI	CCSGG	1 cut(s)	424
BfaI	CTAG	1 cut(s)	615
BisI	GCNGC	3 cut(s)	6, 203, 658
BlsI	GCNGC	3 cut(s)	7, 204, 659
Bme1390I	CCNGG	3 cut(s)	224, 351, 424
BmgT120I	GGNCC	2 cut(s)	273, 528
BmrFI	CCNGG	3 cut(s)	224, 351, 424
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	248, 350, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	1 cut(s)	720
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	224, 351
BseDI	CCNNGG	3 cut(s)	248, 350, 537
BseGI	GGATG	3 cut(s)	151, 272, 575
BseLI	CCNNNNNNNGG	1 cut(s)	720
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	88, 638
BseXI	GCAGC	2 cut(s)	214, 644
BseYI	CCCAGC	2 cut(s)	454, 514
BshFI	GGCC	3 cut(s)	171, 275, 530
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	439, 632
BslI	CCNNNNNNNGG	1 cut(s)	720
BsmFI	GGGAC	2 cut(s)	439, 632
BsnI	GGCC	3 cut(s)	171, 275, 530
Bsp143I	GATC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	248
BspANI	GGCC	3 cut(s)	171, 275, 530
BspPI	GGATC	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	248, 350, 537
BssMI	GATC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	224, 351
Bst4CI	ACNGT	5 cut(s)	166, 182, 413, 496, 703
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	151, 272, 575
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	1 cut(s)	576
BstMBI	GATC	1 cut(s)	573
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 44, 53, 134, 520
BstNI	CCWGG	2 cut(s)	224, 351
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	3 cut(s)	222, 349, 422
BstV1I	GCAGC	2 cut(s)	214, 644
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	171, 275, 530
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	151, 272, 575
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	273, 528
CseI	GACGC	1 cut(s)	663
CviAII	CATG	4 cut(s)	187, 249, 472, 532
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	222, 349
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	4 cut(s)	190, 252, 475, 535
FaqI	GGGAC	2 cut(s)	439, 632
FatI	CATG	4 cut(s)	186, 248, 471, 531
FauNDI	CATATG	2 cut(s)	52, 430
Fnu4HI	GCNGC	3 cut(s)	6, 203, 658
FokI	GGATG	3 cut(s)	138, 279, 582
Fsp4HI	GCNGC	3 cut(s)	6, 203, 658
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	3 cut(s)	6, 203, 658
GsaI	CCCAGC	2 cut(s)	458, 518
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	171, 275, 530
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	663
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	4 cut(s)	190, 252, 475, 535
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HinfI	GANTC	3 cut(s)	78, 358, 419
HpaII	CCGG	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188III	TCNNGA	2 cut(s)	82, 140
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	2 cut(s)	299, 707
HpyAV	CCTTC	3 cut(s)	372, 434, 438
HpyCH4III	ACNGT	5 cut(s)	166, 182, 413, 496, 703
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 44, 53, 134, 520
HpyF3I	CTNAG	1 cut(s)	690
Hsp92II	CATG	4 cut(s)	190, 252, 475, 535
HspAI	GCGC	1 cut(s)	687
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	52, 142
Lsp1109I	GCAGC	2 cut(s)	214, 644
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	61, 86, 182
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	66, 532, 616, 619
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	3 cut(s)	224, 351, 424
MvaI	CCWGG	2 cut(s)	224, 351
MwoI	GCNNNNNNNGC	5 cut(s)	11, 44, 53, 134, 520
NciI	CCSGG	1 cut(s)	424
NcoI	CCATGG	1 cut(s)	248
NdeI	CATATG	2 cut(s)	52, 430
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	4 cut(s)	190, 252, 475, 535
NmuCI	GTSAC	2 cut(s)	61, 86
NspI	RCATGY	1 cut(s)	475
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	358, 419
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	7, 204, 659
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	222, 349
PspFI	CCCAGC	2 cut(s)	454, 514
PspGI	CCWGG	2 cut(s)	222, 349
PspPI	GGNCC	2 cut(s)	273, 528
SatI	GCNGC	3 cut(s)	6, 203, 658
Sau3AI	GATC	1 cut(s)	573
Sau96I	GGNCC	2 cut(s)	273, 528
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	224, 351, 424
SetI	ASST	7 cut(s)	49, 61, 283, 449, 525, 588, 674
SfaNI	GCATC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	3 cut(s)	222, 349, 422
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	5 cut(s)	166, 182, 413, 496, 703
TaqI	TCGA	4 cut(s)	219, 638, 663, 678
TaqII	GACCGA	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	358, 419
TseFI	GTSAC	2 cut(s)	61, 86
TseI	GCWGC	3 cut(s)	5, 202, 657
Tsp45I	GTSAC	2 cut(s)	61, 86
TspDTI	ATGAA	2 cut(s)	42, 710
XceI	RCATGY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.