Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

9959438 .. 10052350

Gene Structure 92913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCTTCCAGAGCCAGGGGTCCAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAATAAGTCTGCGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACATCTCCTCTCCACAAGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGGCAGTAGAACCAGAGATTTACACAGTGTCGGTGCCTTCTGAATGCGACATGGTCGAGATGGTCATAGCTCCATTTCCTCGTGTTGAGCGTCCCGACTCCGATTTTGGTTATGATGGTAGCGATGTAGAACCCCTACTGTCACTCCCAGGAGTCGGAGATTTCGGTCCTCCTTCGCCGGATGTAATCTATGATCCTTGGTTTTCGCCAGCAAACATTGAGCTCATGTTTAGCAAGTATGCTCGTACGGTTCCTGACAAGTTCACTCTAGGAGAGCTCTGGGACATGACTGAGGGTAACAGAGTTTCATATGACTTCTTTGGATGGATTGCAAGTAAGCTGGAATGGGGACTTCTGTATGTTCTTGCAAGGGATGAGGAGGGTTTTCTATCTAAAGAAGCTGTGAGACGCTGCTATGATGAGGAGGGTTTTCTGTACCGTGCCAAGATGAATGCAAGTGCTGAAGCTAAGATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

239

Amino Acids

26.9

Weight (kDa)

8.6

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	148 - 224	3.1e-24	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	95, 143, 274
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	2 cut(s)	92, 131
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	2 cut(s)	487, 677
AfiI	CCNNNNNNNGG	2 cut(s)	15, 395
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	14, 388
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	6 cut(s)	311, 463, 517, 580, 641, 707
AluI	AGCT	6 cut(s)	311, 463, 517, 580, 641, 707
Alw21I	GWGCWC	2 cut(s)	465, 519
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	2 cut(s)	51, 221
ApeKI	GCWGC	2 cut(s)	46, 651
ApoI	RAATTY	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspS9I	GGNCC	4 cut(s)	20, 158, 222, 407
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	3 cut(s)	20, 158, 407
BaeGI	GKGCMC	2 cut(s)	98, 146
BanI	GGYRCC	3 cut(s)	95, 143, 274
BanII	GRGCYC	2 cut(s)	465, 519
BauI	CACGAG	1 cut(s)	321
Bbv12I	GWGCWC	2 cut(s)	465, 519
BbvI	GCAGC	2 cut(s)	33, 638
BccI	CCATC	4 cut(s)	295, 350, 558, 706
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	2 cut(s)	16, 390
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	47, 652
BlsI	GCNGC	2 cut(s)	48, 653
Bme1390I	CCNGG	2 cut(s)	16, 390
Bme18I	GGWCC	3 cut(s)	20, 158, 407
BmgT120I	GGNCC	4 cut(s)	20, 158, 222, 407
BmiI	GGNNCC	5 cut(s)	21, 97, 145, 276, 492
BmrFI	CCNGG	2 cut(s)	16, 390
BsaJI	CCNNGG	4 cut(s)	15, 23, 388, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 395
BseBI	CCWGG	2 cut(s)	16, 390
BseDI	CCNNGG	4 cut(s)	15, 23, 388, 437
BseGI	GGATG	3 cut(s)	427, 569, 619
BseLI	CCNNNNNNNGG	2 cut(s)	15, 395
BseMII	CTCAG	1 cut(s)	522
BseRI	GAGGAG	3 cut(s)	168, 632, 677
BseSI	GKGCMC	2 cut(s)	98, 146
BseXI	GCAGC	2 cut(s)	33, 638
BshFI	GGCC	2 cut(s)	53, 223
BshNI	GGYRCC	3 cut(s)	95, 143, 274
BsiHKAI	GWGCWC	2 cut(s)	465, 519
BsiSI	CCGG	1 cut(s)	419
BsiWI	CGTACG	1 cut(s)	485
BslFI	GGGAC	3 cut(s)	318, 536, 603
BslI	CCNNNNNNNGG	2 cut(s)	15, 395
BsmAI	GTCTC	1 cut(s)	640
BsmBI	CGTCTC	1 cut(s)	640
BsmFI	GGGAC	3 cut(s)	318, 536, 603
BsmI	GAATGC	2 cut(s)	290, 697
BsnI	GGCC	2 cut(s)	53, 223
Bsp1286I	GDGCHC	4 cut(s)	98, 146, 465, 519
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	2 cut(s)	92, 131
BspANI	GGCC	2 cut(s)	53, 223
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	5 cut(s)	21, 97, 145, 276, 492
BspMAI	CTGCAG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	3 cut(s)	95, 143, 274
BsrBI	CCGCTC	1 cut(s)	133
BssECI	CCNNGG	4 cut(s)	15, 23, 388, 437
BssMI	GATC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	2 cut(s)	23, 437
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	16, 390
Bst4CI	ACNGT	4 cut(s)	268, 381, 490, 680
BstC8I	GCNNGC	3 cut(s)	51, 94, 450
BstDEI	CTNAG	2 cut(s)	531, 708
BstF5I	GGATG	3 cut(s)	427, 569, 619
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	1 cut(s)	433
BstNI	CCWGG	2 cut(s)	16, 390
BstSCI	CCNGG	2 cut(s)	14, 388
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	2 cut(s)	98, 146
BstV1I	GCAGC	2 cut(s)	33, 638
BsuRI	GGCC	2 cut(s)	53, 223
BtgZI	GCGATG	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	427, 569, 619
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	51, 94, 450
Cfr13I	GGNCC	4 cut(s)	20, 158, 222, 407
CseI	GACGC	2 cut(s)	320, 657
Csp6I	GTAC	2 cut(s)	486, 676
CviAII	CATG	4 cut(s)	206, 292, 466, 526
CviQI	GTAC	2 cut(s)	486, 676
DdeI	CTNAG	2 cut(s)	531, 708
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Ecl136II	GAGCTC	2 cut(s)	463, 517
Eco130I	CCWWGG	2 cut(s)	23, 437
Eco24I	GRGCYC	2 cut(s)	465, 519
Eco47I	GGWCC	3 cut(s)	20, 158, 407
Eco53kI	GAGCTC	2 cut(s)	463, 517
EcoICRI	GAGCTC	2 cut(s)	463, 517
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	14, 388
EcoT14I	CCWWGG	2 cut(s)	23, 437
EcoT38I	GRGCYC	2 cut(s)	465, 519
ErhI	CCWWGG	2 cut(s)	23, 437
Esp3I	CGTCTC	1 cut(s)	640
FaeI	CATG	4 cut(s)	209, 295, 469, 529
FaqI	GGGAC	3 cut(s)	318, 536, 603
FatI	CATG	4 cut(s)	205, 291, 465, 525
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	47, 652
FokI	GGATG	3 cut(s)	434, 576, 626
FriOI	GRGCYC	2 cut(s)	465, 519
Fsp4HI	GCNGC	2 cut(s)	47, 652
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	2 cut(s)	47, 652
HaeIII	GGCC	2 cut(s)	53, 223
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	2 cut(s)	320, 657
Hin1II	CATG	4 cut(s)	209, 295, 469, 529
HinfI	GANTC	4 cut(s)	28, 36, 338, 393
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	2 cut(s)	211, 504
Hpy188I	TCNGA	3 cut(s)	283, 343, 398
Hpy188III	TCNNGA	6 cut(s)	9, 73, 233, 298, 335, 494
Hpy8I	GTNNAC	2 cut(s)	211, 504
HpyAV	CCTTC	3 cut(s)	135, 288, 423
HpyCH4III	ACNGT	4 cut(s)	268, 381, 490, 680
HpyCH4V	TGCA	4 cut(s)	49, 572, 608, 695
HpyF3I	CTNAG	2 cut(s)	531, 708
Hsp92II	CATG	4 cut(s)	209, 295, 469, 529
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	33, 638
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	4 cut(s)	191, 233, 381, 536
MalI	GATC	1 cut(s)	435
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	1 cut(s)	433
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	4 cut(s)	98, 146, 465, 519
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	332, 402
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	9 cut(s)	72, 189, 330, 420, 526, 610, 613, 655, 658
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	16, 390
Mva1269I	GAATGC	2 cut(s)	290, 697
MvaI	CCWGG	2 cut(s)	16, 390
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	4 cut(s)	209, 295, 469, 529
NlaIV	GGNNCC	5 cut(s)	21, 97, 145, 276, 492
NmuCI	GTSAC	3 cut(s)	191, 233, 381
OliI	CACNNNNGTG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PctI	GAATGC	2 cut(s)	290, 697
PfeI	GAWTC	2 cut(s)	28, 36
Pfl23II	CGTACG	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	48, 653
PleI	GAGTC	2 cut(s)	332, 401
PpsI	GAGTC	2 cut(s)	332, 401
Psp124BI	GAGCTC	2 cut(s)	465, 519
Psp6I	CCWGG	2 cut(s)	14, 388
PspGI	CCWGG	2 cut(s)	14, 388
PspLI	CGTACG	1 cut(s)	485
PspN4I	GGNNCC	5 cut(s)	21, 97, 145, 276, 492
PspPI	GGNCC	4 cut(s)	20, 158, 222, 407
PstI	CTGCAG	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	487, 677
RsaNI	GTAC	2 cut(s)	486, 676
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	2 cut(s)	465, 519
SatI	GCNGC	2 cut(s)	47, 652
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	4 cut(s)	20, 158, 222, 407
SchI	GAGTC	2 cut(s)	332, 402
ScrFI	CCNGG	2 cut(s)	16, 390
SduI	GDGCHC	4 cut(s)	98, 146, 465, 519
SetI	ASST	6 cut(s)	313, 465, 519, 582, 643, 709
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	20, 158, 407
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	92, 131
SspI	AATATT	1 cut(s)	218
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	2 cut(s)	465, 519
StyD4I	CCNGG	2 cut(s)	14, 388
StyI	CCWWGG	2 cut(s)	23, 437
TaaI	ACNGT	4 cut(s)	268, 381, 490, 680
TaqI	TCGA	1 cut(s)	297
TaqII	GACCGA	2 cut(s)	175, 395
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	28, 36
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	3 cut(s)	191, 233, 381
TseI	GCWGC	2 cut(s)	46, 651
Tsp45I	GTSAC	3 cut(s)	191, 233, 381
TspDTI	ATGAA	2 cut(s)	537, 704
TspRI	CASTG	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	3 cut(s)	20, 158, 407
XapI	RAATTY	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.