Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

22722085 .. 22724326

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1225400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGCGAGTGCTGTGACGGAGAATGAAGCACTGGCCACACAAGCTCCATATGCACCTGTCACTATTGAGAGGAGAGTCAGGAGTAACTTGGAAACCAAACTTCCTAAACCATATATGCCCAGAGCATTGGTTGCTCCAGACACAGACCATCCAACGGGAACGGTCGGCCATCAGCACCGTGACATGAGTGTTCTTCAGCAGCATGTCGCTTTCTTCGACCAGGACTATAATGGCATTGTCTATCCTTGGGAAACTTTTGCTGGATTGCGAGCCATCGGTTTCAATCTTATCGCCTCCGTTGTTATGACTGTTCTTATCAATGGGGCTTTGAGTTATCCCACTCTGCCTGGGTGGATTCCTTCTCCTTTCTTTCCCATACACATTTACAACATTCACAAGGCAAAGCATGGTAGTGATTCCGGGACTTATGACACAGAAGGAAGGTTTAGCCCAGCCAACTTGGAGAACATGTTTAGCAAGTATGCCCATACCGCGCCTGACAAGTTCACGCTGGGGGAGCTTTGGAACATGACCGAGGGGAACAGACTTGGATATGACTTCTTTGGATGGATCGCGAATAAGTTGGAATGGGGGCTATTGTATGTGCTTGCTAGGGATGAAGAGGGTATGCTGTCAAAAGAAGCCGTTAGACGCTGCTTCGATGGAAGCTTGTTCGAGTATTGCGCTGGGATGAATACCGTCGGTAGAGCCAAGATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

242

Amino Acids

26.93

Weight (kDa)

6.05

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	62 - 229	7.3e-77	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	497, 578
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	2 cut(s)	36, 169
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	157
AflIII	ACRYGT	1 cut(s)	471
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	222, 349
AluBI	AGCT	3 cut(s)	47, 523, 672
AluI	AGCT	3 cut(s)	47, 523, 672
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	2 cut(s)	36, 169
ApeKI	GCWGC	3 cut(s)	5, 202, 657
AspLEI	GCGC	2 cut(s)	499, 689
AsuC2I	CCSGG	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	214, 644
BccI	CCATC	6 cut(s)	159, 180, 284, 564, 659, 712
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	2 cut(s)	224, 351
BcnI	CCSGG	1 cut(s)	424
BfaI	CTAG	2 cut(s)	615, 724
BisI	GCNGC	3 cut(s)	6, 203, 658
BlsI	GCNGC	3 cut(s)	7, 204, 659
Bme1390I	CCNGG	3 cut(s)	224, 351, 424
BmrFI	CCNGG	3 cut(s)	224, 351, 424
BpmI	CTGGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	248, 350, 537
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	224, 351
BseDI	CCNNGG	3 cut(s)	248, 350, 537
BseGI	GGATG	4 cut(s)	151, 575, 625, 699
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	214, 644
BseYI	CCCAGC	3 cut(s)	454, 514, 689
Bsh1236I	CGCG	2 cut(s)	497, 578
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	38, 171
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	38, 171
Bsp143I	GATC	1 cut(s)	573
Bsp68I	TCGCGA	1 cut(s)	578
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	2 cut(s)	38, 171
BspFNI	CGCG	2 cut(s)	497, 578
BspPI	GGATC	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	248, 350, 537
BssMI	GATC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	224, 351
Bst4CI	ACNGT	4 cut(s)	166, 182, 313, 703
Bst6I	CTCTTC	1 cut(s)	618
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	273, 612
BstF5I	GGATG	4 cut(s)	151, 575, 625, 699
BstFNI	CGCG	2 cut(s)	497, 578
BstHHI	GCGC	2 cut(s)	499, 689
BstKTI	GATC	1 cut(s)	576
BstMBI	GATC	1 cut(s)	573
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 44, 53, 134, 494, 520
BstNI	CCWGG	2 cut(s)	224, 351
BstNSI	RCATGY	2 cut(s)	209, 475
BstSCI	CCNGG	3 cut(s)	222, 349, 422
BstUI	CGCG	2 cut(s)	497, 578
BstV1I	GCAGC	2 cut(s)	214, 644
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	38, 171
BtsCI	GGATG	4 cut(s)	151, 575, 625, 699
BtsIMutI	CAGTG	1 cut(s)	32
BtuMI	TCGCGA	1 cut(s)	578
Cac8I	GCNNGC	2 cut(s)	273, 612
CfoI	GCGC	2 cut(s)	499, 689
CseI	GACGC	1 cut(s)	663
CviAII	CATG	5 cut(s)	187, 206, 410, 472, 532
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
EaeI	YGGCCR	2 cut(s)	36, 169
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	222, 349
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	5 cut(s)	190, 209, 413, 475, 535
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	5 cut(s)	186, 205, 409, 471, 531
FauNDI	CATATG	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	6, 203, 658
FokI	GGATG	4 cut(s)	138, 582, 632, 706
Fsp4HI	GCNGC	3 cut(s)	6, 203, 658
FspBI	CTAG	2 cut(s)	615, 724
GlaI	GCGC	2 cut(s)	498, 688
GluI	GCNGC	3 cut(s)	6, 203, 658
GsaI	CCCAGC	3 cut(s)	458, 518, 693
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	38, 171
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	663
HhaI	GCGC	2 cut(s)	499, 689
Hin1II	CATG	5 cut(s)	190, 209, 413, 475, 535
Hin6I	GCGC	2 cut(s)	497, 687
HinP1I	GCGC	2 cut(s)	497, 687
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	3 cut(s)	78, 358, 419
HpaII	CCGG	1 cut(s)	423
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188III	TCNNGA	3 cut(s)	82, 140, 577
Hpy8I	GTNNAC	1 cut(s)	510
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	3 cut(s)	372, 434, 438
HpyCH4III	ACNGT	4 cut(s)	166, 182, 313, 703
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 44, 53, 134, 494, 520
Hsp92II	CATG	5 cut(s)	190, 209, 413, 475, 535
HspAI	GCGC	2 cut(s)	497, 687
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	52, 142, 520
Lsp1109I	GCAGC	2 cut(s)	214, 644
MaeI	CTAG	2 cut(s)	615, 724
MaeIII	GTNAC	4 cut(s)	16, 61, 86, 182
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	3 cut(s)	188, 208, 635
MlsI	TGGCCA	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	179, 567
MnlI	CCTC	4 cut(s)	66, 307, 532, 619
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	423
MspR9I	CCNGG	3 cut(s)	224, 351, 424
MvaI	CCWGG	2 cut(s)	224, 351
MvnI	CGCG	2 cut(s)	497, 578
MwoI	GCNNNNNNNGC	6 cut(s)	11, 44, 53, 134, 494, 520
NciI	CCSGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	5 cut(s)	190, 209, 413, 475, 535
NmuCI	GTSAC	3 cut(s)	16, 61, 182
NruI	TCGCGA	1 cut(s)	578
NspI	RCATGY	2 cut(s)	209, 475
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	358, 419
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	7, 204, 659
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	222, 349
PspFI	CCCAGC	3 cut(s)	454, 514, 689
PspGI	CCWGG	2 cut(s)	222, 349
RruI	TCGCGA	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	414
SatI	GCNGC	3 cut(s)	6, 203, 658
Sau3AI	GATC	1 cut(s)	573
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	3 cut(s)	224, 351, 424
SetI	ASST	5 cut(s)	49, 61, 449, 525, 674
SmiMI	CAYNNNNRTG	1 cut(s)	414
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	2 cut(s)	615, 724
StyD4I	CCNGG	3 cut(s)	222, 349, 422
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	4 cut(s)	166, 182, 313, 703
TaqI	TCGA	3 cut(s)	219, 663, 678
TaqII	GACCGA	1 cut(s)	551
TfiI	GAWTC	2 cut(s)	358, 419
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	3 cut(s)	16, 61, 182
TseI	GCWGC	3 cut(s)	5, 202, 657
Tsp45I	GTSAC	3 cut(s)	16, 61, 182
TspDTI	ATGAA	3 cut(s)	42, 636, 710
TspGWI	ACGGA	2 cut(s)	35, 289
TspRI	CASTG	1 cut(s)	39
XceI	RCATGY	2 cut(s)	209, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	615, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.