Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

10805978 .. 10808082

Gene Structure 2105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAGCTCATTTGATTGAGAATGACGCACTGGCAACAGCAGCAAAATATGCACCAGTCACTTATGAGAGGAGAGTCAGGGGGGACTTGGAAACCACACTTCCAAAGCCATATCTTCCCAGAGCCCTGACTGCTCCAGACACAAACCATCCCATGGGAACACCTGGATATCACCATCGCAACTTGAGTGTTCTTCAGCAGCATGTGGCATTTTTTGACCAGGACGAAAATGGAATCGTCTACCCTTGGGAAACTTTTGTTGGTAATTATCTGCATCATGTCCTTATCTCTTGTTCAAGGTCCAAAAGCACCAATAAATGTAGACTTCGAGCTATCGGTTTCAACTCAATTGCATCTCTTATCGTGGCGGTTGTCATCAATGCGGCACTGAGTTATGCTACTCTTCCTGGTTGGTTTCCTTCTCCGTTCTTGCCCATATACATTCTAAACATTCACAAGGCAAAGCATGGTAGTGATACTGGAACATATGACACGGAAGGAAGGTTTTCGCCAGCAAACATTGAGCTCATGTTTAGCAAATATGCTCGTACGGTTCCTGACAAGTTCACTCTAGGAGAGCTTTGGGACATGACTGAGGGAAACCGAGTTTCATACGACTTCTTTGGATGGATTGCAAGTAAGCTGGAATGGGGACTTCTGTATGTTCTCGCTAGGGATGAGGAGGGTTTACTATCTAAAGAAGCTGTGAGACGCTGCTTTGATGGAAGCTTATTCGAGTATTGTGCCAAGATGAATGCAAGTGCAGAAGCTAAGATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

260

Amino Acids

29.23

Weight (kDa)

6.5

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	61 - 248	3.1e-67	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccI	GTMKAC	2 cut(s)	240, 322
AciI	CCGC	2 cut(s)	368, 383
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	297, 343
AjnI	CCWGG	3 cut(s)	163, 219, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	8 cut(s)	8, 332, 526, 580, 643, 704, 729, 770
AluI	AGCT	8 cut(s)	8, 332, 526, 580, 643, 704, 729, 770
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	703
ApeKI	GCWGC	3 cut(s)	41, 199, 714
Asp700I	GAANNNNTTC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	127, 528
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	53, 211, 701
BccI	CCATC	5 cut(s)	156, 183, 621, 716, 769
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	3 cut(s)	165, 221, 408
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	2 cut(s)	572, 672
BisI	GCNGC	4 cut(s)	42, 200, 384, 715
BlsI	GCNGC	4 cut(s)	43, 201, 385, 716
Bme1390I	CCNGG	3 cut(s)	165, 221, 408
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	165, 221, 408
BmsI	GCATC	2 cut(s)	283, 362
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	153, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	36, 56, 484
BseBI	CCWGG	3 cut(s)	165, 221, 408
BseDI	CCNNGG	2 cut(s)	153, 245
BseGI	GGATG	3 cut(s)	148, 632, 682
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	380, 585
BseNI	ACTGG	3 cut(s)	36, 56, 484
BseRI	GAGGAG	2 cut(s)	85, 695
BseXI	GCAGC	3 cut(s)	53, 211, 701
BsgI	GTGCAG	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	528
BsiWI	CGTACG	1 cut(s)	548
BslFI	GGGAC	3 cut(s)	98, 599, 666
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	703
BsmBI	CGTCTC	1 cut(s)	703
BsmFI	GGGAC	3 cut(s)	98, 599, 666
BsmI	GAATGC	1 cut(s)	760
Bsp1286I	GDGCHC	2 cut(s)	127, 528
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	368, 383
BspCNI	CTCAG	2 cut(s)	381, 586
BspLI	GGNNCC	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	36, 56, 484
BssECI	CCNNGG	2 cut(s)	153, 245
BssT1I	CCWWGG	2 cut(s)	153, 245
Bst2UI	CCWGG	3 cut(s)	165, 221, 408
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	389, 594, 771
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	148, 632, 682
BstMAI	GTCTC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
BstNI	CCWGG	3 cut(s)	165, 221, 408
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	163, 219, 406
BstV1I	GCAGC	3 cut(s)	53, 211, 701
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	148, 632, 682
BtsIMutI	CAGTG	2 cut(s)	29, 386
Cac8I	GCNNGC	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	300
CseI	GACGC	2 cut(s)	35, 720
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	6 cut(s)	154, 203, 278, 467, 529, 589
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	3 cut(s)	389, 594, 771
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	153, 245
Eco24I	GRGCYC	2 cut(s)	127, 528
Eco32I	GATATC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	163, 219, 406
EcoRV	GATATC	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	153, 245
EcoT38I	GRGCYC	2 cut(s)	127, 528
ErhI	CCWWGG	2 cut(s)	153, 245
Esp3I	CGTCTC	1 cut(s)	703
FaeI	CATG	6 cut(s)	157, 206, 281, 470, 532, 592
FaqI	GGGAC	3 cut(s)	98, 599, 666
FatI	CATG	6 cut(s)	153, 202, 277, 466, 528, 588
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	2 cut(s)	240, 322
Fnu4HI	GCNGC	4 cut(s)	42, 200, 384, 715
FokI	GGATG	3 cut(s)	135, 639, 689
FriOI	GRGCYC	2 cut(s)	127, 528
Fsp4HI	GCNGC	4 cut(s)	42, 200, 384, 715
FspBI	CTAG	2 cut(s)	572, 672
GluI	GCNGC	4 cut(s)	42, 200, 384, 715
GsuI	CTGGAG	1 cut(s)	120
HgaI	GACGC	2 cut(s)	35, 720
Hin1II	CATG	6 cut(s)	157, 206, 281, 470, 532, 592
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	2 cut(s)	75, 234
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	4 cut(s)	241, 323, 567, 689
Hpy188III	TCNNGA	2 cut(s)	137, 557
Hpy8I	GTNNAC	4 cut(s)	241, 323, 567, 689
HpyAV	CCTTC	3 cut(s)	429, 491, 495
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	6 cut(s)	53, 274, 353, 635, 758, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
HpyF3I	CTNAG	3 cut(s)	389, 594, 771
Hsp92II	CATG	6 cut(s)	157, 206, 281, 470, 532, 592
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	3 cut(s)	53, 211, 701
LweI	GCATC	2 cut(s)	283, 362
MaeI	CTAG	2 cut(s)	572, 672
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	107, 185, 395
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	127, 528
MluCI	AATT	2 cut(s)	265, 348
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	63, 589, 673, 676
MroXI	GAANNNNTTC	1 cut(s)	505
MslI	CAYNNNNRTG	1 cut(s)	471
MspR9I	CCNGG	3 cut(s)	165, 221, 408
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	3 cut(s)	165, 221, 408
MwoI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	487
NlaIII	CATG	6 cut(s)	157, 206, 281, 470, 532, 592
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	206
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	43, 201, 385, 716
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	163, 219, 406
PspGI	CCWGG	3 cut(s)	163, 219, 406
PspLI	CGTACG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	528
SatI	GCNGC	4 cut(s)	42, 200, 384, 715
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	165, 221, 408
SduI	GDGCHC	2 cut(s)	127, 528
SfaNI	GCATC	2 cut(s)	283, 362
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	265, 348
SsiI	CCGC	2 cut(s)	368, 383
SspMI	CTAG	2 cut(s)	572, 672
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	3 cut(s)	163, 219, 406
StyI	CCWWGG	2 cut(s)	153, 245
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	328, 735
TasI	AATT	2 cut(s)	265, 348
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	2 cut(s)	36, 393
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	3 cut(s)	41, 199, 714
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	600, 767
TspGWI	ACGGA	2 cut(s)	414, 509
TspRI	CASTG	2 cut(s)	36, 393
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	300
XceI	RCATGY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	2 cut(s)	240, 322
XmnI	GAANNNNTTC	1 cut(s)	505
XspI	CTAG	2 cut(s)	572, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.