Rroxscaffold_5G00340070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002731
Physical Location & Seq
Forward (+)
8429149 .. 8434473
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340070.1

Sequence Viewer

Length: 609 bp
ATGTCTTCCAGAACCAGGGGTCCAAGGAATCGTGAAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAAAAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACATCTCCTCTCCACAAGGGCACCGAGTCAGAAGAATCCAAGTTATCCGCTGCACCTTCCCCCTCGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGGCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTTCTGAATGCGACATGGTCAAGATGGTCATAGCCCCATCTCCTCCTCTTTCATCATACATCTATTTTTCTTTTGTTATGGCATATTCGGTCACTACTGGTTTTTGTGTTTTGACATCATTACTTACTCGTGTTCTTCTTTTGTTACCACAAACAGTTCCTCGTGTTGAGCGTCCCGACTCCGATTTTGGTTATGATGGTAGCGATGTGGAACCCCTACTGTCACTCCCAGAATTCGGAGATCTCCCTCCTCCTTCGCCGGATATATTCTATGGTCCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.26

Weight (kDa)

9.36

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 143, 191
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 131, 219
AcsI RAATTY 2 cut(s) 276, 557
AfiI CCNNNNNNNGG 2 cut(s) 15, 560
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 14
AloI GAACNNNNNNTCC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 51, 269
ApeKI GCWGC 2 cut(s) 46, 221
ApoI RAATTY 2 cut(s) 276, 557
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspS9I GGNCC 4 cut(s) 20, 158, 270, 599
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 3 cut(s) 20, 158, 599
BaeGI GKGCMC 3 cut(s) 98, 146, 194
BanI GGYRCC 3 cut(s) 95, 143, 191
BauI CACGAG 2 cut(s) 453, 486
BbvI GCAGC 2 cut(s) 33, 208
BccI CCATC 3 cut(s) 343, 370, 515
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 16
BfmI CTRYAG 1 cut(s) 47
BglII AGATCT 1 cut(s) 565
BisI GCNGC 2 cut(s) 47, 222
BlsI GCNGC 2 cut(s) 48, 223
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 3 cut(s) 20, 158, 599
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 4 cut(s) 20, 158, 270, 599
BmiI GGNNCC 5 cut(s) 21, 97, 145, 193, 537
BmrFI CCNGG 1 cut(s) 16
BsaJI CCNNGG 4 cut(s) 15, 23, 234, 602
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 560
Bse1I ACTGG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 4 cut(s) 15, 23, 234, 602
BseLI CCNNNNNNNGG 2 cut(s) 15, 560
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 4 cut(s) 168, 357, 360, 564
BseSI GKGCMC 3 cut(s) 98, 146, 194
BseXI GCAGC 2 cut(s) 33, 208
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 53, 271
BshNI GGYRCC 3 cut(s) 95, 143, 191
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 2 cut(s) 15, 560
BsmFI GGGAC 1 cut(s) 483
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 2 cut(s) 53, 271
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 98, 146, 194
Bsp143I GATC 1 cut(s) 565
BspACI CCGC 2 cut(s) 131, 219
BspANI GGCC 2 cut(s) 53, 271
BspLI GGNNCC 5 cut(s) 21, 97, 145, 193, 537
BspMAI CTGCAG 1 cut(s) 51
BspT107I GGYRCC 3 cut(s) 95, 143, 191
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 4 cut(s) 15, 23, 234, 602
BssMI GATC 1 cut(s) 565
BssSI CACGAG 2 cut(s) 453, 486
BssT1I CCWWGG 1 cut(s) 23
Bst2BI CACGAG 2 cut(s) 453, 486
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 3 cut(s) 316, 481, 546
BstC8I GCNNGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 568
BstMBI GATC 1 cut(s) 565
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 3 cut(s) 98, 146, 194
BstV1I GCAGC 2 cut(s) 33, 208
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 2 cut(s) 53, 271
BtgZI GCGATG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 321, 327
Cac8I GCNNGC 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 20, 158, 270, 599
CseI GACGC 1 cut(s) 485
CviAII CATG 2 cut(s) 254, 340
CviJI RGCY 5 cut(s) 53, 61, 103, 271, 359
CviKI_1 RGCY 5 cut(s) 53, 61, 103, 271, 359
DpnI GATC 1 cut(s) 567
DpnII GATC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 20, 158, 599
Eco88I CYCGRG 1 cut(s) 235
EcoRI GAATTC 2 cut(s) 276, 557
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 257, 343
FaiI YATR 9 cut(s) 255, 341, 356, 382, 404, 409, 519, 590, 597
FaqI GGGAC 1 cut(s) 483
FatI CATG 2 cut(s) 253, 339
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 47, 222
Fsp4HI GCNGC 2 cut(s) 47, 222
GluI GCNGC 2 cut(s) 47, 222
HaeIII GGCC 2 cut(s) 53, 271
HapII CCGG 1 cut(s) 584
HgaI GACGC 1 cut(s) 485
Hin1II CATG 2 cut(s) 257, 343
HinfI GANTC 4 cut(s) 28, 197, 206, 503
HpaII CCGG 1 cut(s) 584
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 202, 331, 508, 563
Hpy188III TCNNGA 6 cut(s) 9, 32, 73, 281, 346, 500
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 135, 237, 336, 588
HpyCH4III ACNGT 3 cut(s) 316, 481, 546
HpyCH4V TGCA 2 cut(s) 49, 224
Hsp92II CATG 2 cut(s) 257, 343
Kzo9I GATC 1 cut(s) 565
Lsp1109I GCAGC 2 cut(s) 33, 208
MaeIII GTNAC 5 cut(s) 239, 281, 415, 468, 546
MalI GATC 1 cut(s) 567
MbiI CCGCTC 1 cut(s) 133
MboI GATC 1 cut(s) 565
MboII GAAGA 3 cut(s) 175, 215, 452
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 3 cut(s) 98, 146, 194
MluCI AATT 2 cut(s) 276, 557
MlyI GAGTC 2 cut(s) 206, 497
MnlI CCTC 8 cut(s) 72, 189, 244, 378, 381, 495, 582, 585
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 1 cut(s) 16
NdeII GATC 1 cut(s) 565
NlaIII CATG 2 cut(s) 257, 343
NlaIV GGNNCC 5 cut(s) 21, 97, 145, 193, 537
NmuCI GTSAC 4 cut(s) 239, 281, 415, 546
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 28, 206
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 48, 223
PleI GAGTC 2 cut(s) 205, 497
PpsI GAGTC 2 cut(s) 205, 497
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 5 cut(s) 21, 97, 145, 193, 537
PspPI GGNCC 4 cut(s) 20, 158, 270, 599
PstI CTGCAG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 565
PsyI GACNNNGTC 1 cut(s) 341
SatI GCNGC 2 cut(s) 47, 222
Sau3AI GATC 1 cut(s) 565
Sau96I GGNCC 4 cut(s) 20, 158, 270, 599
SchI GAGTC 2 cut(s) 206, 497
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 3 cut(s) 98, 146, 194
SetI ASST 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 3 cut(s) 20, 158, 599
Sse9I AATT 2 cut(s) 276, 557
SsiI CCGC 2 cut(s) 131, 219
SspI AATATT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 3 cut(s) 316, 481, 546
TaqII GACCGA 2 cut(s) 175, 403
TasI AATT 2 cut(s) 276, 557
TfiI GAWTC 2 cut(s) 28, 206
TscAI CASTG 2 cut(s) 321, 327
TseFI GTSAC 4 cut(s) 239, 281, 415, 546
TseI GCWGC 2 cut(s) 46, 221
Tsp45I GTSAC 4 cut(s) 239, 281, 415, 546
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 2 cut(s) 321, 327
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 3 cut(s) 20, 158, 599
XapI RAATTY 2 cut(s) 276, 557
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.