Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Reverse (-)

55864768 .. 55871594

Gene Structure 6827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTCTTCCAGAGCCAGGGGTCCAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAAAAAGTCTGGGGGCACCAAGTCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGACTTCCACTTCTCCTCTCCACAAGGGCACCAAGTCAGAAGAATCCAAGTTATCCGCTGCACCTTCCCCCTCGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGCCAGTAGAACCAGAGATTTACACAGTGTCGGTGCCTTCTGAATGCGACATGGTCGAGATGGTCATAGCTCCATTTCCTGATGTTATGCGTCCCGACTCCGATTTTGGTTATGATGGTAGCGATGTAGAACCCCTACTGTCACTCCCAGAATTCGGAGATTTCCCTCTTTCTTCGCCGGATATATTCTATGGTCCTCGGTTTTCGCCAGCCAACATTGAGCTCATGTTTAGCAAGTATGCTCGTACGGTTCCTGACAAGTTCACTCTAGGAGAGCTTTGGGACATGACTGAGGGTAACAGAGTTTCATATGACTTCTTTGGATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

206

Amino Acids

22.85

Weight (kDa)

9.08

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	163 - 205	1.4e-08	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	95, 143, 191, 322
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	2 cut(s)	131, 219
AcsI	RAATTY	2 cut(s)	276, 440
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	2 cut(s)	15, 443
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	359, 511, 565
AluI	AGCT	3 cut(s)	359, 511, 565
Alw21I	GWGCWC	1 cut(s)	513
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	2 cut(s)	51, 269
ApeKI	GCWGC	2 cut(s)	46, 221
ApoI	RAATTY	2 cut(s)	276, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AspS9I	GGNCC	4 cut(s)	20, 158, 270, 482
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	235
AvaII	GGWCC	3 cut(s)	20, 158, 482
BaeGI	GKGCMC	3 cut(s)	98, 146, 194
BanI	GGYRCC	4 cut(s)	95, 143, 191, 322
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	33, 208
BccI	CCATC	3 cut(s)	343, 398, 606
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	16
BfaI	CTAG	1 cut(s)	557
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	47, 222
BlsI	GCNGC	2 cut(s)	48, 223
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	3 cut(s)	20, 158, 482
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	4 cut(s)	20, 158, 270, 482
BmiI	GGNNCC	6 cut(s)	21, 97, 145, 193, 324, 540
BmrFI	CCNGG	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	15, 23, 234, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 443
Bse1I	ACTGG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	4 cut(s)	15, 23, 234, 485
BseGI	GGATG	1 cut(s)	617
BseLI	CCNNNNNNNGG	2 cut(s)	15, 443
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	3 cut(s)	98, 146, 194
BseXI	GCAGC	2 cut(s)	33, 208
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	53, 271
BshNI	GGYRCC	4 cut(s)	95, 143, 191, 322
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	467
BsiWI	CGTACG	1 cut(s)	533
BslFI	GGGAC	2 cut(s)	366, 584
BslI	CCNNNNNNNGG	2 cut(s)	15, 443
BsmFI	GGGAC	2 cut(s)	366, 584
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	53, 271
BsoBI	CYCGRG	1 cut(s)	235
Bsp1286I	GDGCHC	4 cut(s)	98, 146, 194, 513
BspACI	CCGC	2 cut(s)	131, 219
BspANI	GGCC	2 cut(s)	53, 271
BspCNI	CTCAG	1 cut(s)	571
BspLI	GGNNCC	6 cut(s)	21, 97, 145, 193, 324, 540
BspMAI	CTGCAG	1 cut(s)	51
BspT107I	GGYRCC	4 cut(s)	95, 143, 191, 322
BsrBI	CCGCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	4 cut(s)	15, 23, 234, 485
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	316, 429, 538
BstC8I	GCNNGC	3 cut(s)	51, 290, 498
BstDEI	CTNAG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	617
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	3 cut(s)	98, 146, 194
BstV1I	GCAGC	2 cut(s)	33, 208
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	53, 271
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	617
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	51, 290, 498
Cfr13I	GGNCC	4 cut(s)	20, 158, 270, 482
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	4 cut(s)	254, 340, 514, 574
CviJI	RGCY	9 cut(s)	14, 53, 61, 271, 292, 359, 500, 511, 565
CviKI_1	RGCY	9 cut(s)	14, 53, 61, 271, 292, 359, 500, 511, 565
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	3 cut(s)	20, 158, 482
Eco53kI	GAGCTC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	511
EcoRI	GAATTC	2 cut(s)	276, 440
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	4 cut(s)	257, 343, 517, 577
FaqI	GGGAC	2 cut(s)	366, 584
FatI	CATG	4 cut(s)	253, 339, 513, 573
FauNDI	CATATG	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	47, 222
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	47, 222
FspBI	CTAG	1 cut(s)	557
GluI	GCNGC	2 cut(s)	47, 222
HaeIII	GGCC	2 cut(s)	53, 271
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	257, 343, 517, 577
HinfI	GANTC	4 cut(s)	28, 36, 206, 386
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	259, 552
Hpy188I	TCNGA	4 cut(s)	202, 331, 391, 446
Hpy188III	TCNNGA	7 cut(s)	9, 73, 281, 346, 368, 383, 542
Hpy8I	GTNNAC	2 cut(s)	259, 552
HpyAV	CCTTC	3 cut(s)	135, 237, 336
HpyCH4III	ACNGT	3 cut(s)	316, 429, 538
HpyCH4V	TGCA	2 cut(s)	49, 224
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	257, 343, 517, 577
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	2 cut(s)	33, 208
MaeI	CTAG	1 cut(s)	557
MaeIII	GTNAC	4 cut(s)	239, 281, 429, 584
MbiI	CCGCTC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	175, 215, 453
MhlI	GDGCHC	4 cut(s)	98, 146, 194, 513
MluCI	AATT	2 cut(s)	276, 440
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	72, 189, 244, 465, 495, 574
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	598
NlaIII	CATG	4 cut(s)	257, 343, 517, 577
NlaIV	GGNNCC	6 cut(s)	21, 97, 145, 193, 324, 540
NmuCI	GTSAC	3 cut(s)	239, 281, 429
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	28, 36, 206
Pfl23II	CGTACG	1 cut(s)	533
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	48, 223
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspLI	CGTACG	1 cut(s)	533
PspN4I	GGNNCC	6 cut(s)	21, 97, 145, 193, 324, 540
PspPI	GGNCC	4 cut(s)	20, 158, 270, 482
PstI	CTGCAG	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	513
SatI	GCNGC	2 cut(s)	47, 222
Sau96I	GGNCC	4 cut(s)	20, 158, 270, 482
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	4 cut(s)	98, 146, 194, 513
SetI	ASST	4 cut(s)	229, 361, 513, 567
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	20, 158, 482
Sse9I	AATT	2 cut(s)	276, 440
SsiI	CCGC	2 cut(s)	131, 219
SspI	AATATT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	3 cut(s)	316, 429, 538
TaqI	TCGA	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	276, 440
TfiI	GAWTC	3 cut(s)	28, 36, 206
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	3 cut(s)	239, 281, 429
TseI	GCWGC	2 cut(s)	46, 221
Tsp45I	GTSAC	3 cut(s)	239, 281, 429
TspDTI	ATGAA	1 cut(s)	585
TspRI	CASTG	1 cut(s)	321
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	3 cut(s)	20, 158, 482
XapI	RAATTY	2 cut(s)	276, 440
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.