AT5G55240

peroxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002731
Physical Location & Seq
Forward (+)
22405896 .. 22407351
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55240.1

Sequence Viewer

Length: 732 bp
ATGACGTCGATGGAGAGGATGGAGAGAGACGCAATGGAGACGGTGGCTCCATACGCTCGGGTGACTTATCACCGCCGTGTTCGTGGTGACTTGGATGACACACTTCCTAAACCTTATTTGCCGAGAGCACTACAAGCACCTGACATGGAACACCCACAAGGAACACCAGATCATAGACATAATGGCCTTAGTGTTCTTCAGCAACATGTCGCTTTCTTCGATTTGGACAATAATGGCATCATTTATCCCTTTGAAACCTTCTCTGGGTTCCGGTTACTCGGTTTCAATTTACTCGCGTCGCTTATCTTGGCTGCTGGTATCAACATAGCTCTTAGCTATGCTACTCTCCCGGGATGGTTACCGTCTCCGTTCTTCCCTATATATATTCACAACATTCACAAGGCAAAGCACGGAAGCGACTCTAAAACATATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAGCAAATACGCGAGGACCATACCAGACAAGTTGAGTCTTGGAGAGCTATGGGACATGACCGAAGGAAACCGCGATGCCTTTGACTTTTTTGGATGGTTAGCGAGCAAAGTGGAATGGGGTGTATTGTATGCATTAGCGAGTGATGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTGCTTCGATGGGAGCTTGTTCGAGTATTGTGCCAAGAACTACGCTGAGATCAAGGAGTACAAGACGTACTACTGA

Protein Analysis

243

Amino Acids

27.88

Weight (kDa)

5.62

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 63 - 229 1.2e-74 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccI GTMKAC 1 cut(s) 449
AccII CGCG 3 cut(s) 296, 488, 549
AciI CCGC 3 cut(s) 73, 547, 655
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 716, 725
AfiI CCNNNNNNNGG 2 cut(s) 264, 654
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 2 cut(s) 254, 286
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 4 cut(s) 329, 336, 523, 672
AluI AGCT 4 cut(s) 329, 336, 523, 672
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 3 cut(s) 21, 32, 369
Ama87I CYCGRG 2 cut(s) 57, 349
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 492
AsuC2I CCSGG 2 cut(s) 350, 351
AsuHPI GGTGA 3 cut(s) 62, 73, 98
AvaI CYCGRG 2 cut(s) 57, 349
AvaII GGWCC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 298
BccI CCATC 5 cut(s) 4, 13, 348, 564, 659
BceAI ACGGC 1 cut(s) 60
BcgI CGANNNNNNTGC 2 cut(s) 668, 702
BcnI CCSGG 2 cut(s) 350, 351
BcoDI GTCTC 3 cut(s) 21, 32, 369
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme1390I CCNGG 2 cut(s) 350, 351
Bme18I GGWCC 1 cut(s) 492
BmeT110I CYCGRG 2 cut(s) 57, 349
BmgT120I GGNCC 1 cut(s) 492
BmiI GGNNCC 2 cut(s) 48, 269
BmrFI CCNGG 2 cut(s) 350, 351
BmsI GCATC 2 cut(s) 246, 541
BpuEI CTTGAG 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 350, 351
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 349
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 654
Bse3DI GCAATG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 4 cut(s) 24, 100, 359, 575
BseLI CCNNNNNNNGG 2 cut(s) 264, 654
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 693
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 3 cut(s) 296, 488, 549
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 2 cut(s) 57, 349
BsiSI CCGG 2 cut(s) 271, 350
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 264, 654
BsmAI GTCTC 3 cut(s) 21, 32, 369
BsmBI CGTCTC 3 cut(s) 21, 32, 369
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 2 cut(s) 57, 349
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 169, 705
BspACI CCGC 3 cut(s) 73, 547, 655
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 694
BspFNI CGCG 3 cut(s) 296, 488, 549
BspLI GGNNCC 2 cut(s) 48, 269
BsrDI GCAATG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 2 cut(s) 169, 705
BssNAI GTATAC 1 cut(s) 450
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 43, 363
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 188, 332, 702
BstEII GGTNACC 1 cut(s) 357
BstF5I GGATG 4 cut(s) 24, 100, 359, 575
BstFNI CGCG 3 cut(s) 296, 488, 549
BstKTI GATC 2 cut(s) 172, 708
BstMAI GTCTC 3 cut(s) 21, 32, 369
BstMBI GATC 2 cut(s) 169, 705
BstMWI GCNNNNNNNGC 2 cut(s) 53, 134
BstNSI RCATGY 1 cut(s) 209
BstPI GGTNACC 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 348, 349
BstUI CGCG 3 cut(s) 296, 488, 549
BstV1I GCAGC 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 4 cut(s) 24, 100, 359, 575
Cac8I GCNNGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 492
Cfr9I CCCGGG 1 cut(s) 349
CseI GACGC 2 cut(s) 38, 285
Csp6I GTAC 2 cut(s) 715, 724
CviAII CATG 3 cut(s) 145, 206, 532
CviJI RGCY 8 cut(s) 47, 186, 311, 329, 336, 523, 647, 672
CviKI_1 RGCY 8 cut(s) 47, 186, 311, 329, 336, 523, 647, 672
CviQI GTAC 2 cut(s) 715, 724
DdeI CTNAG 3 cut(s) 188, 332, 702
DpnI GATC 2 cut(s) 171, 707
DpnII GATC 2 cut(s) 169, 705
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 2 cut(s) 57, 349
Eco91I GGTNACC 1 cut(s) 357
EcoO65I GGTNACC 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 610
Esp3I CGTCTC 3 cut(s) 21, 32, 369
FaeI CATG 3 cut(s) 148, 209, 535
FaqI GGGAC 1 cut(s) 542
FatI CATG 3 cut(s) 144, 205, 531
FauNDI CATATG 1 cut(s) 430
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 4 cut(s) 31, 107, 366, 582
Fsp4HI GCNGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 186
HapII CCGG 2 cut(s) 271, 350
HgaI GACGC 2 cut(s) 38, 285
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 148, 209, 535
HinfI GANTC 4 cut(s) 419, 460, 511, 630
HpaII CCGG 2 cut(s) 271, 350
HphI GGTGA 3 cut(s) 62, 73, 98
Hpy166II GTNNAC 1 cut(s) 450
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 450
Hpy99I CGWCG 2 cut(s) 10, 301
HpyAV CCTTC 5 cut(s) 268, 434, 438, 533, 620
HpyCH4III ACNGT 2 cut(s) 43, 363
HpyCH4IV ACGT 2 cut(s) 5, 722
HpyCH4V TGCA 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 134
HpyF3I CTNAG 3 cut(s) 188, 332, 702
HpySE526I ACGT 2 cut(s) 5, 722
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 148, 209, 535
Kzo9I GATC 2 cut(s) 169, 705
LmnI GCTCC 2 cut(s) 52, 669
LpnPI CCDG 8 cut(s) 153, 180, 249, 284, 300, 363, 468, 513
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 246, 541
MaeII ACGT 2 cut(s) 5, 722
MaeIII GTNAC 4 cut(s) 61, 86, 273, 357
MalI GATC 2 cut(s) 171, 707
MboI GATC 2 cut(s) 169, 705
MboII GAAGA 4 cut(s) 188, 208, 364, 635
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 286
MlyI GAGTC 2 cut(s) 413, 520
MnlI CCTC 2 cut(s) 9, 483
Mph1103I ATGCAT 1 cut(s) 610
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 2 cut(s) 271, 350
MspR9I CCNGG 2 cut(s) 350, 351
MvnI CGCG 3 cut(s) 296, 488, 549
MwoI GCNNNNNNNGC 2 cut(s) 53, 134
NciI CCSGG 2 cut(s) 350, 351
NdeI CATATG 1 cut(s) 430
NdeII GATC 2 cut(s) 169, 705
NlaIII CATG 3 cut(s) 148, 209, 535
NlaIV GGNNCC 2 cut(s) 48, 269
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 61, 86
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 75
PciI ACATGT 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 2 cut(s) 460, 630
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 2 cut(s) 413, 519
PpsI GAGTC 2 cut(s) 413, 519
PscI ACATGT 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 48, 269
PspPI GGNCC 1 cut(s) 492
RsaI GTAC 2 cut(s) 716, 725
RsaNI GTAC 2 cut(s) 715, 724
RseI CAYNNNNRTG 1 cut(s) 75
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 169, 705
Sau96I GGNCC 1 cut(s) 492
SchI GAGTC 2 cut(s) 413, 520
ScrFI CCNGG 2 cut(s) 350, 351
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 246, 541
SinI GGWCC 1 cut(s) 492
SmaI CCCGGG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 286
SsiI CCGC 3 cut(s) 73, 547, 655
StyD4I CCNGG 2 cut(s) 348, 349
TaaI ACNGT 2 cut(s) 43, 363
TaiI ACGT 2 cut(s) 8, 725
TaqI TCGA 4 cut(s) 8, 219, 663, 678
TaqII GACCGA 1 cut(s) 551
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 2 cut(s) 460, 630
TseFI GTSAC 2 cut(s) 61, 86
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 2 cut(s) 61, 86
TspDTI ATGAA 2 cut(s) 453, 636
TspGWI ACGGA 2 cut(s) 357, 426
TspMI CCCGGG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 492
XceI RCATGY 1 cut(s) 209
XmaI CCCGGG 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 449
ZraI GACGTC 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.