Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

15456547 .. 15458438

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTGCGAGTGCTGTGATGGAGAATGAAGCATTGGCAACAGAAGCTCCATATGCACCTGTGACTATAGAGAGGAGAGTCAGGAGTGACTTGGAAACCAAACTTCCTAAACCATATATGCCCAGAGCATTGGTTGCTCCAGACACAAACCATCCAACAGGAACAGGTGGCCATCAGCACCGTAACATGAGTGTTCTTCAGCAGCATATTGCGTTTTTCGACCAGGACGACAATGGCATCGTCTATCCGTGGGAAACTTTTACCGGATGTCGGGCCATAGGTTTCAACCCAATCGTCGCCGTTTTTATGGCTGTTCTTATCAATGGGGCTATGAGTTATCCCACTGCCTCACAGGGTTGGATTCCTTCTCCCTTCTTTCCCATATACATCTACAACATTCACAAGGCAAAGCACGGTAGCGATTCCGGGACATATGACACAGAAGGAAGGTATAGCCCAGCCAACATTGAGAACATGTTTAGTAAGTATGCCCATACTGTGCCTGACAAGTTCACGTTGGGAGAGCTTTGGGCCATGACCGAGGGGAACAGAGTTGCCCTTGATTTCTTTGGATGGATCACAAGTAAGCTGGAATGGGGGCTATTGTATGTGCCTGCTAGGGACGAGGAGGGTTTGCTGTCGAAAGAAGCCGTTAGACGCTGCTTCGATGGAAGCTTGTTCGATTATTGCGCTAAGATGAATACCGCCGGTAGGGCCAAGATGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

243

Amino Acids

26.99

Weight (kDa)

5.97

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	705
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	270, 711, 723
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
AluBI	AGCT	4 cut(s)	47, 526, 589, 675
AluI	AGCT	4 cut(s)	47, 526, 589, 675
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	4 cut(s)	169, 273, 531, 714
ApeKI	GCWGC	3 cut(s)	5, 202, 660
AspLEI	GCGC	1 cut(s)	692
AspS9I	GGNCC	3 cut(s)	273, 531, 714
AsuC2I	CCSGG	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	214, 647
BccI	CCATC	6 cut(s)	13, 159, 180, 567, 662, 715
BceAI	ACGGC	2 cut(s)	284, 635
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	427
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	66
BglI	GCCNNNNNGGC	1 cut(s)	713
BisI	GCNGC	3 cut(s)	6, 203, 661
BlsI	GCNGC	3 cut(s)	7, 204, 662
Bme1390I	CCNGG	2 cut(s)	224, 427
BmgT120I	GGNCC	3 cut(s)	273, 531, 714
BmrFI	CCNGG	2 cut(s)	224, 427
BmsI	GCATC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	248, 540
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 711, 723
Bse118I	RCCGGY	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	248, 540
BseGI	GGATG	3 cut(s)	151, 272, 578
BseLI	CCNNNNNNNGG	3 cut(s)	270, 711, 723
BseRI	GAGGAG	2 cut(s)	88, 641
BseXI	GCAGC	2 cut(s)	214, 647
BseYI	CCCAGC	1 cut(s)	457
BshFI	GGCC	4 cut(s)	171, 275, 533, 716
BsiSI	CCGG	3 cut(s)	264, 426, 708
BslFI	GGGAC	2 cut(s)	442, 635
BslI	CCNNNNNNNGG	3 cut(s)	270, 711, 723
BsmFI	GGGAC	2 cut(s)	442, 635
BsnI	GGCC	4 cut(s)	171, 275, 533, 716
Bsp143I	GATC	1 cut(s)	576
BspACI	CCGC	1 cut(s)	705
BspANI	GGCC	4 cut(s)	171, 275, 533, 716
BspPI	GGATC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	707
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	248, 540
BssMI	GATC	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	3 cut(s)	182, 416, 499
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	1 cut(s)	693
BstDSI	CCRYGG	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	151, 272, 578
BstHHI	GCGC	1 cut(s)	692
BstKTI	GATC	1 cut(s)	579
BstMBI	GATC	1 cut(s)	576
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 44, 53, 134, 713
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	2 cut(s)	222, 425
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	214, 647
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	171, 275, 533, 716
BtgI	CCRYGG	1 cut(s)	248
BtsCI	GGATG	3 cut(s)	151, 272, 578
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	615
CfoI	GCGC	1 cut(s)	692
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	3 cut(s)	273, 531, 714
CseI	GACGC	1 cut(s)	666
CviAII	CATG	3 cut(s)	187, 475, 535
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	1 cut(s)	578
DpnII	GATC	1 cut(s)	576
EaeI	YGGCCR	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	3 cut(s)	190, 478, 538
FaqI	GGGAC	2 cut(s)	442, 635
FatI	CATG	3 cut(s)	186, 474, 534
FauNDI	CATATG	2 cut(s)	52, 433
Fnu4HI	GCNGC	3 cut(s)	6, 203, 661
FokI	GGATG	3 cut(s)	138, 279, 585
Fsp4HI	GCNGC	3 cut(s)	6, 203, 661
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	691
GluI	GCNGC	3 cut(s)	6, 203, 661
GsaI	CCCAGC	1 cut(s)	461
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	171, 275, 533, 716
HapII	CCGG	3 cut(s)	264, 426, 708
HgaI	GACGC	1 cut(s)	666
HhaI	GCGC	1 cut(s)	692
Hin1II	CATG	3 cut(s)	190, 478, 538
Hin6I	GCGC	1 cut(s)	690
HinP1I	GCGC	1 cut(s)	690
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	3 cut(s)	78, 361, 422
HpaII	CCGG	3 cut(s)	264, 426, 708
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188III	TCNNGA	2 cut(s)	82, 140
Hpy8I	GTNNAC	1 cut(s)	513
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	4 cut(s)	375, 382, 437, 441
HpyCH4III	ACNGT	3 cut(s)	182, 416, 499
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 44, 53, 134, 713
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	3 cut(s)	190, 478, 538
HspAI	GCGC	1 cut(s)	690
Kzo9I	GATC	1 cut(s)	576
LmnI	GCTCC	2 cut(s)	52, 142
Lsp1109I	GCAGC	2 cut(s)	214, 647
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	3 cut(s)	61, 86, 182
MalI	GATC	1 cut(s)	578
MboI	GATC	1 cut(s)	576
MboII	GAAGA	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	179, 338
MnlI	CCTC	5 cut(s)	66, 358, 535, 619, 622
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MspI	CCGG	3 cut(s)	264, 426, 708
MspR9I	CCNGG	2 cut(s)	224, 427
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	11, 44, 53, 134, 713
NciI	CCSGG	1 cut(s)	427
NdeI	CATATG	2 cut(s)	52, 433
NdeII	GATC	1 cut(s)	576
NlaIII	CATG	3 cut(s)	190, 478, 538
NmuCI	GTSAC	2 cut(s)	61, 86
NspI	RCATGY	1 cut(s)	478
PciI	ACATGT	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	361, 422
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	3 cut(s)	7, 204, 662
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	3 cut(s)	273, 531, 714
SatI	GCNGC	3 cut(s)	6, 203, 661
Sau3AI	GATC	1 cut(s)	576
Sau96I	GGNCC	3 cut(s)	273, 531, 714
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	224, 427
SetI	ASST	9 cut(s)	49, 61, 169, 283, 452, 518, 528, 591, 677
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	66
SsiI	CCGC	1 cut(s)	705
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	222, 425
TaaI	ACNGT	3 cut(s)	182, 416, 499
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	4 cut(s)	219, 641, 666, 681
TaqII	GACCGA	1 cut(s)	554
TfiI	GAWTC	2 cut(s)	361, 422
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	61, 86
TseI	GCWGC	3 cut(s)	5, 202, 660
Tsp45I	GTSAC	2 cut(s)	61, 86
TspDTI	ATGAA	2 cut(s)	42, 713
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	349
XceI	RCATGY	1 cut(s)	478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.