Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

3316083 .. 3318610

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G046800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGCTGTGATGGAGGGTGAAGCATTGGCAACAGAAGCTCCGTATGCACCTGTCACTATTGAGAGGAAGGTCAGGGGTGACTTGGAAACCAAACTTCCTAAGCCATACATGCCAAGAGCATTGGTTGCTCCGGACACAAACCATCCAACAGGAACACCGGGCCATCAGCACCGCGACATGAGTGTTCTTCAGCAGCATGTAGCTTTTTTCGACCAGGACGACAATGGGATCGTCTACCCTTGGGAAACTTTTACTGGATTGCGAGCCGTTGGTTTCAATCTCATCGCTGCCATTGTCATGACTGTTCTTATCAATGGGGCTCTGAGTTATGCTACTCTGCCTGGGTGGATTCCTTCTCCTTTCTTTCCCATATACATTTACAACATTCACAAATCAAAGCACGGTAGTGATTCTGGAACATATGACACAGAAGGAAGGTTTAGCCCAGTCAGCATTGAGAACATGTTTAGCAAGTATGCCAATACTGTGCCAGACAAGTTCACCCTGGGAGAGCTTTGGGACATGACCGAGGGGAACAGAGTTGCATTCGACTTCTTCGGATGGATCGCGAGTAAGTTGGAATGGGGACTTCTGTATGTTCTTGCCAGAGATGAGGATGGTCTTCTGTCTAAAGAAGCCGTTAGGCGCTGCTTTGACGGAAGCTTGTTCGAGTATTGTGCTAAGATTAATGCAGCTGGTATGACTAAGATAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

240

Amino Acids

26.58

Weight (kDa)

5.36

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	177, 572
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	2 cut(s)	239, 575
AcuI	CTGAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	216, 343, 507
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	5 cut(s)	41, 206, 517, 666, 698
AluI	AGCT	5 cut(s)	41, 206, 517, 666, 698
AlwI	GGATC	2 cut(s)	239, 575
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	5 cut(s)	5, 196, 290, 651, 695
AseI	ATTAAT	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	32, 92, 496
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	617
BbvI	GCAGC	4 cut(s)	208, 277, 638, 707
BccI	CCATC	5 cut(s)	7, 153, 174, 558, 614
BceAI	ACGGC	2 cut(s)	254, 626
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	3 cut(s)	218, 345, 509
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	1 cut(s)	718
BfoI	RGCGCY	1 cut(s)	652
BisI	GCNGC	5 cut(s)	6, 197, 291, 652, 696
BlsI	GCNGC	5 cut(s)	7, 198, 292, 653, 697
Bme1390I	CCNGG	4 cut(s)	162, 218, 345, 509
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	4 cut(s)	162, 218, 345, 509
BmrI	ACTGGG	1 cut(s)	443
BmuI	ACTGGG	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	102
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	5 cut(s)	242, 344, 507, 508, 531
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse1I	ACTGG	2 cut(s)	262, 449
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	3 cut(s)	218, 345, 509
BseDI	CCNNGG	5 cut(s)	242, 344, 507, 508, 531
BseGI	GGATG	3 cut(s)	145, 569, 625
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	262, 449
BseXI	GCAGC	4 cut(s)	208, 277, 638, 707
Bsh1236I	CGCG	2 cut(s)	177, 572
BshFI	GGCC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	134, 161
BslFI	GGGAC	2 cut(s)	536, 603
BsmFI	GGGAC	2 cut(s)	536, 603
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	231, 567
Bsp68I	TCGCGA	1 cut(s)	572
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	133
BspFNI	CGCG	2 cut(s)	177, 572
BspHI	TCATGA	1 cut(s)	300
BspPI	GGATC	2 cut(s)	239, 575
BsrI	ACTGG	2 cut(s)	262, 449
BssECI	CCNNGG	5 cut(s)	242, 344, 507, 508, 531
BssMI	GATC	2 cut(s)	231, 567
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	3 cut(s)	218, 345, 509
Bst4CI	ACNGT	3 cut(s)	307, 407, 490
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	4 cut(s)	102, 326, 684, 708
BstF5I	GGATG	3 cut(s)	145, 569, 625
BstFNI	CGCG	2 cut(s)	177, 572
BstH2I	RGCGCY	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	2 cut(s)	234, 570
BstMBI	GATC	2 cut(s)	231, 567
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 47, 112, 128, 453
BstNI	CCWGG	3 cut(s)	218, 345, 509
BstNSI	RCATGY	3 cut(s)	115, 203, 469
BstSCI	CCNGG	4 cut(s)	160, 216, 343, 507
BstUI	CGCG	2 cut(s)	177, 572
BstV1I	GCAGC	4 cut(s)	208, 277, 638, 707
BstV2I	GAAGAC	1 cut(s)	617
BsuRI	GGCC	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	145, 569, 625
BtuMI	TCGCGA	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	6 cut(s)	112, 181, 200, 301, 466, 526
DdeI	CTNAG	4 cut(s)	102, 326, 684, 708
DpnI	GATC	2 cut(s)	233, 569
DpnII	GATC	2 cut(s)	231, 567
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	216, 343, 507
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	6 cut(s)	115, 184, 203, 304, 469, 529
FaqI	GGGAC	2 cut(s)	536, 603
FatI	CATG	6 cut(s)	111, 180, 199, 300, 465, 525
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	5 cut(s)	6, 197, 291, 652, 696
FokI	GGATG	3 cut(s)	132, 576, 632
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	5 cut(s)	6, 197, 291, 652, 696
FspBI	CTAG	1 cut(s)	718
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	5 cut(s)	6, 197, 291, 652, 696
HaeII	RGCGCY	1 cut(s)	652
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	134, 161
HhaI	GCGC	1 cut(s)	651
Hin1II	CATG	6 cut(s)	115, 184, 203, 304, 469, 529
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	2 cut(s)	352, 413
HpaII	CCGG	2 cut(s)	134, 161
HphI	GGTGA	3 cut(s)	32, 92, 496
Hpy166II	GTNNAC	2 cut(s)	238, 504
Hpy188I	TCNGA	2 cut(s)	327, 563
Hpy188III	TCNNGA	4 cut(s)	134, 301, 417, 571
Hpy8I	GTNNAC	2 cut(s)	238, 504
HpyAV	CCTTC	4 cut(s)	64, 366, 428, 432
HpyCH4III	ACNGT	3 cut(s)	307, 407, 490
HpyCH4V	TGCA	3 cut(s)	50, 548, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 47, 112, 128, 453
HpyF3I	CTNAG	4 cut(s)	102, 326, 684, 708
Hsp92II	CATG	6 cut(s)	115, 184, 203, 304, 469, 529
HspAI	GCGC	1 cut(s)	649
Kpn2I	TCCGGA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	231, 567
LmnI	GCTCC	2 cut(s)	46, 136
Lsp1109I	GCAGC	4 cut(s)	208, 277, 638, 707
MaeI	CTAG	1 cut(s)	718
MaeIII	GTNAC	2 cut(s)	55, 80
MalI	GATC	2 cut(s)	233, 569
MboI	GATC	2 cut(s)	231, 567
MboII	GAAGA	3 cut(s)	182, 550, 617
MhlI	GDGCHC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	173, 561
MnlI	CCTC	4 cut(s)	10, 60, 526, 610
MroI	TCCGGA	1 cut(s)	133
MseI	TTAA	1 cut(s)	690
MslI	CAYNNNNRTG	2 cut(s)	299, 408
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	2 cut(s)	134, 161
MspR9I	CCNGG	4 cut(s)	162, 218, 345, 509
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	3 cut(s)	218, 345, 509
MvnI	CGCG	2 cut(s)	177, 572
MwoI	GCNNNNNNNGC	5 cut(s)	38, 47, 112, 128, 453
NciI	CCSGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	231, 567
NlaIII	CATG	6 cut(s)	115, 184, 203, 304, 469, 529
NmuCI	GTSAC	2 cut(s)	55, 80
NruI	TCGCGA	1 cut(s)	572
NspI	RCATGY	3 cut(s)	115, 203, 469
OliI	CACNNNNGTG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	300
PasI	CCCWGGG	1 cut(s)	508
PciI	ACATGT	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	352, 413
PkrI	GCNGC	5 cut(s)	7, 198, 292, 653, 697
PscI	ACATGT	1 cut(s)	465
PshBI	ATTAAT	1 cut(s)	690
Psp6I	CCWGG	3 cut(s)	216, 343, 507
PspGI	CCWGG	3 cut(s)	216, 343, 507
PspPI	GGNCC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	698
RruI	TCGCGA	1 cut(s)	572
RseI	CAYNNNNRTG	2 cut(s)	299, 408
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	5 cut(s)	6, 197, 291, 652, 696
Sau3AI	GATC	2 cut(s)	231, 567
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	4 cut(s)	162, 218, 345, 509
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	43, 55, 75, 208, 443, 519, 668, 700
SmiMI	CAYNNNNRTG	2 cut(s)	299, 408
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	718
StyD4I	CCNGG	4 cut(s)	160, 216, 343, 507
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	307, 407, 490
TaqI	TCGA	3 cut(s)	213, 552, 672
TaqII	GACCGA	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	352, 413
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseFI	GTSAC	2 cut(s)	55, 80
TseI	GCWGC	5 cut(s)	5, 196, 290, 651, 695
Tsp45I	GTSAC	2 cut(s)	55, 80
TspGWI	ACGGA	2 cut(s)	33, 675
VspI	ATTAAT	1 cut(s)	690
XceI	RCATGY	3 cut(s)	115, 203, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.