Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Reverse (-)

21894236 .. 21894514

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1150700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAACTAGGTCCGGGCAGCCTATGCACCCTTTATTTTTTCTTTGACACACCCCCAACTTCATATATGCCCAGAGCATTGGTTGCTCCAGACACAAACCATCCAACAGGAACAGTTGGCCATCAGCACCGTAACATGAGTGTTCTTCAGCAGCATATTGCGTTTTTCGACCAGGACGACAATGGCATCGTCTATCAGTGGGAAACTTTTACTAGGGTGGATTCCTTCTCCTTTCTTTCCCATATACATCTACAACATTCACAAGGCAAAGCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

93

Amino Acids

10.52

Weight (kDa)

6.1

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	45 - 75	3.8e-09	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	18, 151
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	30, 163
BccI	CCATC	2 cut(s)	108, 129
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	15
BfaI	CTAG	2 cut(s)	8, 213
BisI	GCNGC	2 cut(s)	19, 152
BlsI	GCNGC	2 cut(s)	20, 153
Bme1390I	CCNGG	2 cut(s)	15, 173
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	15, 173
BmsI	GCATC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	30, 163
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	3 cut(s)	115, 131, 276
BstAPI	GCANNNNNTGC	2 cut(s)	24, 83
BstF5I	GGATG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 83
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	13, 171
BstV1I	GCAGC	2 cut(s)	30, 163
BstXI	CCANNNNNNTGG	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	2 cut(s)	21, 120
CviKI_1	RGCY	2 cut(s)	21, 120
EaeI	YGGCCR	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	139
FaiI	YATR	8 cut(s)	25, 64, 66, 68, 137, 156, 243, 245
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	19, 152
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	19, 152
FspBI	CTAG	2 cut(s)	8, 213
GluI	GCNGC	2 cut(s)	19, 152
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	115, 131, 276
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 83
Hsp92II	CATG	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	6 cut(s)	27, 85, 93, 102, 158, 185
Lsp1109I	GCAGC	2 cut(s)	30, 163
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	8, 213
MaeIII	GTNAC	1 cut(s)	131
MboII	GAAGA	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	120
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	15, 173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	24, 83
NciI	CCSGG	1 cut(s)	15
NlaIII	CATG	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	20, 153
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	11
SatI	GCNGC	2 cut(s)	19, 152
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	15, 173
SetI	ASST	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	8, 213
StyD4I	CCNGG	2 cut(s)	13, 171
TaaI	ACNGT	3 cut(s)	115, 131, 276
TaqI	TCGA	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	2 cut(s)	18, 151
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XspI	CTAG	2 cut(s)	8, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.