Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

8296898 .. 8304695

Gene Structure 7798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTTCTAGAGCCAGGGGTCCAAGGAATCGTGAAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCGGAAAAAGAATAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACATCTCCTCTCCACAAGGGCACCACGTCGAAAGGACCGAAGATTATTTCCACTTCTCCTCTCCACAAGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGCCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTGCTGAATTGGACATGGTCAAGCTGGTCATAGCTCCATTTCCTCGTGTTAAGCGTCCCGACTCCGATTTTGTTGATGATGGTAGCGATGTGGAACCCCTACTGTCACTCCCAGAATTCGGAGATTTTCCTACTTCTTCGCCGGATATATTCTATGGTCCTCGGTTTTCGCCAGCCAACATTAAGCTCATGTTTAGCAAGTATGCTCGTACGGTTCCTGACAAGTTCACTCTAGGAGAGCTTTGGGACATGACTGAGGGTAACAGAGTTTCATATGACTTCTTTGGATGGATTGCAAGTAAGCTGGAATGGGGACTTCTGTATGTTCTTGCAAGGGATGAGGAGGGTTTTCTATCTAAAGAAGCTGTGAGACGCTGCTTTGATGGAAGCTTATTCGGGTACTGTGCCAAGATGAATGCAAGTGCTGAAGCTAAGATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

256

Amino Acids

28.64

Weight (kDa)

9.58

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	164 - 244	1.1e-26	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	95, 143, 191
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	279, 443
AfaI	GTAC	2 cut(s)	538, 728
AfiI	CCNNNNNNNGG	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	14
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	8 cut(s)	352, 362, 514, 568, 631, 692, 717, 758
AluI	AGCT	8 cut(s)	352, 362, 514, 568, 631, 692, 717, 758
Alw26I	GTCTC	1 cut(s)	691
AlwNI	CAGNNNCTG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	2 cut(s)	51, 272
ApeKI	GCWGC	2 cut(s)	46, 702
ApoI	RAATTY	2 cut(s)	279, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspS9I	GGNCC	5 cut(s)	20, 158, 206, 273, 485
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	4 cut(s)	20, 158, 206, 485
BaeGI	GKGCMC	3 cut(s)	98, 146, 194
BanI	GGYRCC	3 cut(s)	95, 143, 191
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	33, 689
BccI	CCATC	4 cut(s)	401, 609, 704, 757
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	691
BfaI	CTAG	2 cut(s)	9, 560
BfmI	CTRYAG	1 cut(s)	47
BisI	GCNGC	2 cut(s)	47, 703
BlsI	GCNGC	2 cut(s)	48, 704
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	4 cut(s)	20, 158, 206, 485
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	5 cut(s)	20, 158, 206, 273, 485
BmiI	GGNNCC	6 cut(s)	21, 97, 145, 193, 423, 543
BmrFI	CCNGG	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	15, 23, 488
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	296
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	15, 23, 488
BseGI	GGATG	2 cut(s)	620, 670
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	3 cut(s)	168, 219, 683
BseSI	GKGCMC	3 cut(s)	98, 146, 194
BseXI	GCAGC	2 cut(s)	33, 689
BshFI	GGCC	2 cut(s)	53, 274
BshNI	GGYRCC	3 cut(s)	95, 143, 191
BsiSI	CCGG	2 cut(s)	73, 470
BsiWI	CGTACG	1 cut(s)	536
BslFI	GGGAC	3 cut(s)	369, 587, 654
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	691
BsmBI	CGTCTC	1 cut(s)	691
BsmFI	GGGAC	3 cut(s)	369, 587, 654
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	2 cut(s)	53, 274
Bsp1286I	GDGCHC	3 cut(s)	98, 146, 194
Bsp13I	TCCGGA	1 cut(s)	72
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	53, 274
BspCNI	CTCAG	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	72
BspLI	GGNNCC	6 cut(s)	21, 97, 145, 193, 423, 543
BspMAI	CTGCAG	1 cut(s)	51
BspT107I	GGYRCC	3 cut(s)	95, 143, 191
BsrBI	CCGCTC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	15, 23, 488
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	4 cut(s)	319, 432, 541, 731
BstC8I	GCNNGC	4 cut(s)	51, 293, 330, 501
BstDEI	CTNAG	2 cut(s)	582, 759
BstF5I	GGATG	2 cut(s)	620, 670
BstMAI	GTCTC	1 cut(s)	691
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	3 cut(s)	98, 146, 194
BstV1I	GCAGC	2 cut(s)	33, 689
BsuRI	GGCC	2 cut(s)	53, 274
BtgZI	GCGATG	1 cut(s)	429
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	620, 670
BtsIMutI	CAGTG	2 cut(s)	324, 330
Cac8I	GCNNGC	4 cut(s)	51, 293, 330, 501
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	5 cut(s)	20, 158, 206, 273, 485
CseI	GACGC	2 cut(s)	371, 708
Csp6I	GTAC	2 cut(s)	537, 727
CviAII	CATG	4 cut(s)	257, 343, 517, 577
CviQI	GTAC	2 cut(s)	537, 727
DdeI	CTNAG	2 cut(s)	582, 759
Eco130I	CCWWGG	1 cut(s)	23
Eco47I	GGWCC	4 cut(s)	20, 158, 206, 485
EcoRI	GAATTC	2 cut(s)	279, 443
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	691
FaeI	CATG	4 cut(s)	260, 346, 520, 580
FaqI	GGGAC	3 cut(s)	369, 587, 654
FatI	CATG	4 cut(s)	256, 342, 516, 576
FauNDI	CATATG	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	47, 703
FokI	GGATG	2 cut(s)	627, 677
Fsp4HI	GCNGC	2 cut(s)	47, 703
FspBI	CTAG	2 cut(s)	9, 560
GluI	GCNGC	2 cut(s)	47, 703
HaeIII	GGCC	2 cut(s)	53, 274
HapII	CCGG	2 cut(s)	73, 470
HgaI	GACGC	2 cut(s)	371, 708
Hin1II	CATG	4 cut(s)	260, 346, 520, 580
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	2 cut(s)	28, 389
HpaII	CCGG	2 cut(s)	73, 470
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	262, 555
Hpy188I	TCNGA	2 cut(s)	394, 449
Hpy188III	TCNNGA	6 cut(s)	9, 32, 73, 284, 386, 545
Hpy8I	GTNNAC	2 cut(s)	262, 555
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	4 cut(s)	319, 432, 541, 731
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	49, 623, 659, 746
HpyF3I	CTNAG	2 cut(s)	582, 759
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	4 cut(s)	260, 346, 520, 580
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	33, 689
MaeI	CTAG	2 cut(s)	9, 560
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	4 cut(s)	242, 284, 432, 587
MbiI	CCGCTC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	175, 223, 456
MhlI	GDGCHC	3 cut(s)	98, 146, 194
MluCI	AATT	3 cut(s)	279, 335, 443
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	8 cut(s)	72, 189, 240, 381, 498, 577, 661, 664
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	2 cut(s)	378, 510
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	2 cut(s)	73, 470
MspR9I	CCNGG	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	601
NlaIII	CATG	4 cut(s)	260, 346, 520, 580
NlaIV	GGNNCC	6 cut(s)	21, 97, 145, 193, 423, 543
NmuCI	GTSAC	3 cut(s)	242, 284, 432
OliI	CACNNNNGTG	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 379
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	28
Pfl23II	CGTACG	1 cut(s)	536
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	48, 704
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspLI	CGTACG	1 cut(s)	536
PspN4I	GGNNCC	6 cut(s)	21, 97, 145, 193, 423, 543
PspPI	GGNCC	5 cut(s)	20, 158, 206, 273, 485
PstI	CTGCAG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	2 cut(s)	538, 728
RsaNI	GTAC	2 cut(s)	537, 727
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	378, 510
SatI	GCNGC	2 cut(s)	47, 703
Sau96I	GGNCC	5 cut(s)	20, 158, 206, 273, 485
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	3 cut(s)	98, 146, 194
SetI	ASST	9 cut(s)	200, 354, 364, 516, 570, 633, 694, 719, 760
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	4 cut(s)	20, 158, 206, 485
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	279, 335, 443
SsiI	CCGC	1 cut(s)	131
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	2 cut(s)	9, 560
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	4 cut(s)	319, 432, 541, 731
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	200
TaqII	GACCGA	2 cut(s)	175, 223
TasI	AATT	3 cut(s)	279, 335, 443
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	378, 510
Tru9I	TTAA	2 cut(s)	378, 510
TscAI	CASTG	2 cut(s)	324, 330
TseFI	GTSAC	3 cut(s)	242, 284, 432
TseI	GCWGC	2 cut(s)	46, 702
Tsp45I	GTSAC	3 cut(s)	242, 284, 432
TspDTI	ATGAA	2 cut(s)	588, 755
TspRI	CASTG	2 cut(s)	324, 330
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	4 cut(s)	20, 158, 206, 485
XapI	RAATTY	2 cut(s)	279, 443
XbaI	TCTAGA	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	2 cut(s)	9, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.