RchiOBHm_Chr4g0395111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002731
Physical Location & Seq
Forward (+)
10879606 .. 10884634
5029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36757

Sequence Viewer

Length: 492 bp
ATGTCTTCCAGAGCCAGGGGTCGAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAATAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACTTCTCCTCTCCACAAGGGCACCAAGTCAGAGGAATCCAAGTTATCCGCTGCACCTTCCCCCTCGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGCCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTTCTGAATGCGACATGGTCGAGATGGTCATAGCTCCATTTCCTCGTGTTATGCGTCCCGACTCCGATTTTGGTTATGATGGTAGCGATGTAGAACCCCTGCTGTCACTCCCAGGAGTCGGAGATTTCGGTCCTCCTTCGCCGGATATAATCTATGATCCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.89

Weight (kDa)

9.52

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 143, 191
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 131, 219
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 15, 443
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 2 cut(s) 14, 436
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 51, 269
ApeKI GCWGC 2 cut(s) 46, 221
ApoI RAATTY 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AspS9I GGNCC 3 cut(s) 158, 270, 455
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 2 cut(s) 158, 455
BaeGI GKGCMC 3 cut(s) 98, 146, 194
BanI GGYRCC 3 cut(s) 95, 143, 191
BauI CACGAG 1 cut(s) 369
BbvI GCAGC 2 cut(s) 33, 208
BccI CCATC 2 cut(s) 343, 398
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 2 cut(s) 16, 438
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 2 cut(s) 47, 222
BlsI GCNGC 2 cut(s) 48, 223
Bme1390I CCNGG 2 cut(s) 16, 438
Bme18I GGWCC 2 cut(s) 158, 455
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 158, 270, 455
BmiI GGNNCC 3 cut(s) 97, 145, 193
BmrFI CCNGG 2 cut(s) 16, 438
BsaJI CCNNGG 4 cut(s) 15, 234, 436, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 443
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 16, 438
BseDI CCNNGG 4 cut(s) 15, 234, 436, 485
BseLI CCNNNNNNNGG 2 cut(s) 15, 443
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 3 cut(s) 98, 146, 194
BseXI GCAGC 2 cut(s) 33, 208
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 53, 271
BshNI GGYRCC 3 cut(s) 95, 143, 191
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 15, 443
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 2 cut(s) 53, 271
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 98, 146, 194
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 2 cut(s) 131, 219
BspANI GGCC 2 cut(s) 53, 271
BspLI GGNNCC 3 cut(s) 97, 145, 193
BspMAI CTGCAG 1 cut(s) 51
BspPI GGATC 1 cut(s) 476
BspT107I GGYRCC 3 cut(s) 95, 143, 191
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 15, 234, 436, 485
BssMI GATC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 16, 438
Bst4CI ACNGT 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 51, 290
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstNI CCWGG 2 cut(s) 16, 438
BstSCI CCNGG 2 cut(s) 14, 436
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 3 cut(s) 98, 146, 194
BstV1I GCAGC 2 cut(s) 33, 208
BsuRI GGCC 2 cut(s) 53, 271
BtgZI GCGATG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 321, 327
Cac8I GCNNGC 2 cut(s) 51, 290
Cfr13I GGNCC 3 cut(s) 158, 270, 455
CseI GACGC 1 cut(s) 368
CviAII CATG 2 cut(s) 254, 340
CviJI RGCY 7 cut(s) 14, 53, 61, 103, 271, 292, 359
CviKI_1 RGCY 7 cut(s) 14, 53, 61, 103, 271, 292, 359
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 158, 455
Eco88I CYCGRG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 276
EcoRII CCWGG 2 cut(s) 14, 436
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 2 cut(s) 257, 343
FaiI YATR 7 cut(s) 255, 341, 356, 377, 402, 473, 480
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 253, 339
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 47, 222
Fsp4HI GCNGC 2 cut(s) 47, 222
GluI GCNGC 2 cut(s) 47, 222
HaeIII GGCC 2 cut(s) 53, 271
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 257, 343
HinfI GANTC 5 cut(s) 28, 36, 206, 386, 441
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 202, 331, 391, 446
Hpy188III TCNNGA 5 cut(s) 9, 73, 281, 346, 383
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 5 cut(s) 18, 135, 237, 336, 471
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 49, 224
Hsp92II CATG 2 cut(s) 257, 343
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 2 cut(s) 33, 208
MaeIII GTNAC 3 cut(s) 239, 281, 429
MalI GATC 1 cut(s) 483
MbiI CCGCTC 1 cut(s) 133
MboI GATC 1 cut(s) 481
MboII GAAGA 1 cut(s) 175
MhlI GDGCHC 3 cut(s) 98, 146, 194
MluCI AATT 1 cut(s) 276
MlyI GAGTC 2 cut(s) 380, 450
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 6 cut(s) 72, 189, 196, 244, 378, 468
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 16, 438
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 2 cut(s) 16, 438
NdeII GATC 1 cut(s) 481
NlaIII CATG 2 cut(s) 257, 343
NlaIV GGNNCC 3 cut(s) 97, 145, 193
NmuCI GTSAC 3 cut(s) 239, 281, 429
PcsI WCGNNNNNNNCGW 2 cut(s) 28, 376
PctI GAATGC 1 cut(s) 338
PfeI GAWTC 3 cut(s) 28, 36, 206
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 48, 223
PleI GAGTC 2 cut(s) 380, 449
PpsI GAGTC 2 cut(s) 380, 449
Psp6I CCWGG 2 cut(s) 14, 436
PspGI CCWGG 2 cut(s) 14, 436
PspN4I GGNNCC 3 cut(s) 97, 145, 193
PspPI GGNCC 3 cut(s) 158, 270, 455
PstI CTGCAG 1 cut(s) 51
PsyI GACNNNGTC 1 cut(s) 341
SatI GCNGC 2 cut(s) 47, 222
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 3 cut(s) 158, 270, 455
SchI GAGTC 2 cut(s) 380, 450
ScrFI CCNGG 2 cut(s) 16, 438
SduI GDGCHC 3 cut(s) 98, 146, 194
SetI ASST 2 cut(s) 229, 361
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 2 cut(s) 158, 455
Sse9I AATT 1 cut(s) 276
SsiI CCGC 2 cut(s) 131, 219
SspI AATATT 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 14, 436
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 22, 345
TaqII GACCGA 2 cut(s) 175, 443
TasI AATT 1 cut(s) 276
TfiI GAWTC 3 cut(s) 28, 36, 206
TscAI CASTG 2 cut(s) 321, 327
TseFI GTSAC 3 cut(s) 239, 281, 429
TseI GCWGC 2 cut(s) 46, 221
Tsp45I GTSAC 3 cut(s) 239, 281, 429
TspRI CASTG 2 cut(s) 321, 327
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 158, 455
XapI RAATTY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.