Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

11667693 .. 11669817

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAGCTCATTTGATTGAGAATGACGCACTGGCAACAGCAGCAAAATATGCACCAGTCACTTATGAGAGGAGAGTCAGGGGGGACTTGGAAACCACACTTCCAAAGCCATATCTTCCCAGAGCCCTGACTGCTCCAGACACAAACCATCCCATGGGAACACCTGGATATCACCATCGCAACTTGAGTGTTCTTCAGCAGCATGTGGCATTTTTTGACCAGGACGAAAATGGAATCGTCTACCCTTGGGAAACTTTTGTTGGACTTCGAGCTATCGGTTTCAACTCAATTGCATCTCTTATCGTGGCGGTTGTCATCAATGCAGCACTGAGTTATGCTACTCTTCCTGGTTGGTTTCCTTCTCCGTTCTTGCCCATATACATTCTAAACATTCACAAGGCAAAGCATGGTAGTGATACTGGAACATATGACACAGAAGGAAGGTTTTCACCAGCAAACATTGAGCTCATGTTTAGCAAGTATGCTCATACGGTTCCTGACAAGTTCACTCTAGGAGAGCTTTGGGACATGACTGAGGGAAATAGAGTTTCATACGACTTCTTTGGATGGATTGCAAGTAAGCTGGAATGGGGACTTCTGTATGTTCTCGCAAGGGATGAGGAGGGTTTACTATCTAAAGAAGCGGTGAGACGCTGCTTTGATGGAAGCTTATTCGAGTATTGTGCCAAGATGAATGCAAGTGCAGAAGCTAAGATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

240

Amino Acids

26.83

Weight (kDa)

5.74

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	61 - 228	3.9e-75	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	2 cut(s)	308, 644
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	283
AjnI	CCWGG	3 cut(s)	163, 219, 346
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	7 cut(s)	8, 272, 466, 520, 583, 669, 710
AluI	AGCT	7 cut(s)	8, 272, 466, 520, 583, 669, 710
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	643
ApeKI	GCWGC	5 cut(s)	5, 41, 199, 323, 654
Asp700I	GAANNNNTTC	1 cut(s)	445
AsuHPI	GGTGA	3 cut(s)	164, 441, 658
BanII	GRGCYC	2 cut(s)	127, 468
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	17, 53, 211, 335, 641
BccI	CCATC	5 cut(s)	156, 183, 561, 656, 709
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	3 cut(s)	165, 221, 348
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	5 cut(s)	6, 42, 200, 324, 655
BlsI	GCNGC	5 cut(s)	7, 43, 201, 325, 656
Bme1390I	CCNGG	3 cut(s)	165, 221, 348
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	3 cut(s)	165, 221, 348
BmsI	GCATC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	153, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	36, 56, 424
BseBI	CCWGG	3 cut(s)	165, 221, 348
BseDI	CCNNGG	2 cut(s)	153, 245
BseGI	GGATG	3 cut(s)	148, 572, 622
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	320, 525
BseNI	ACTGG	3 cut(s)	36, 56, 424
BseRI	GAGGAG	2 cut(s)	85, 635
BseXI	GCAGC	5 cut(s)	17, 53, 211, 335, 641
BsgI	GTGCAG	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	468
BslFI	GGGAC	3 cut(s)	98, 539, 606
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	3 cut(s)	98, 539, 606
BsmI	GAATGC	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	127, 468
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	308, 644
BspCNI	CTCAG	2 cut(s)	321, 526
BspLI	GGNNCC	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	36, 56, 424
BssECI	CCNNGG	2 cut(s)	153, 245
BssT1I	CCWWGG	2 cut(s)	153, 245
Bst2UI	CCWGG	3 cut(s)	165, 221, 348
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	329, 534, 711
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	148, 572, 622
BstMAI	GTCTC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
BstNI	CCWGG	3 cut(s)	165, 221, 348
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	3 cut(s)	163, 219, 346
BstV1I	GCAGC	5 cut(s)	17, 53, 211, 335, 641
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	148, 572, 622
BtsIMutI	CAGTG	2 cut(s)	29, 326
CseI	GACGC	2 cut(s)	35, 660
CviAII	CATG	5 cut(s)	154, 203, 407, 469, 529
DdeI	CTNAG	3 cut(s)	329, 534, 711
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	466
Eco130I	CCWWGG	2 cut(s)	153, 245
Eco24I	GRGCYC	2 cut(s)	127, 468
Eco32I	GATATC	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	163, 219, 346
EcoRV	GATATC	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	153, 245
EcoT38I	GRGCYC	2 cut(s)	127, 468
ErhI	CCWWGG	2 cut(s)	153, 245
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	5 cut(s)	157, 206, 410, 472, 532
FaqI	GGGAC	3 cut(s)	98, 539, 606
FatI	CATG	5 cut(s)	153, 202, 406, 468, 528
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	6, 42, 200, 324, 655
FokI	GGATG	3 cut(s)	135, 579, 629
FriOI	GRGCYC	2 cut(s)	127, 468
Fsp4HI	GCNGC	5 cut(s)	6, 42, 200, 324, 655
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	5 cut(s)	6, 42, 200, 324, 655
GsuI	CTGGAG	1 cut(s)	120
HgaI	GACGC	2 cut(s)	35, 660
Hin1II	CATG	5 cut(s)	157, 206, 410, 472, 532
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	2 cut(s)	75, 234
HphI	GGTGA	3 cut(s)	164, 441, 658
Hpy166II	GTNNAC	3 cut(s)	241, 507, 629
Hpy188III	TCNNGA	2 cut(s)	137, 497
Hpy8I	GTNNAC	3 cut(s)	241, 507, 629
HpyAV	CCTTC	3 cut(s)	369, 431, 435
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	6 cut(s)	53, 293, 323, 575, 698, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
HpyF3I	CTNAG	3 cut(s)	329, 534, 711
Hsp92II	CATG	5 cut(s)	157, 206, 410, 472, 532
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	5 cut(s)	17, 53, 211, 335, 641
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	107, 185, 335
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	127, 468
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	63, 529, 613, 616
MroXI	GAANNNNTTC	1 cut(s)	445
MslI	CAYNNNNRTG	1 cut(s)	411
MspR9I	CCNGG	3 cut(s)	165, 221, 348
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	3 cut(s)	165, 221, 348
MwoI	GCNNNNNNNGC	3 cut(s)	41, 50, 131
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	427
NlaIII	CATG	5 cut(s)	157, 206, 410, 472, 532
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	206
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	5 cut(s)	7, 43, 201, 325, 656
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	468
Psp6I	CCWGG	3 cut(s)	163, 219, 346
PspGI	CCWGG	3 cut(s)	163, 219, 346
PspN4I	GGNNCC	1 cut(s)	495
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	468
SatI	GCNGC	5 cut(s)	6, 42, 200, 324, 655
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	165, 221, 348
SduI	GDGCHC	2 cut(s)	127, 468
SetI	ASST	9 cut(s)	10, 166, 274, 446, 468, 522, 585, 671, 712
SfaNI	GCATC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	2 cut(s)	308, 644
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	3 cut(s)	163, 219, 346
StyI	CCWWGG	2 cut(s)	153, 245
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	268, 675
TasI	AATT	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	2 cut(s)	36, 333
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	5 cut(s)	5, 41, 199, 323, 654
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	540, 707
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	36, 333
Van91I	CCANNNNNTGG	1 cut(s)	154
XceI	RCATGY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.