Rh4BG055500

Caleosin related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002731
Physical Location & Seq
Forward (+)
9948342 .. 9955935
7594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG055500.1

Sequence Viewer

Length: 795 bp
ATGCCTTCCAGAGCCAGGGGTCGAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAAAAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACATCTCCTCTGAGTCCTCTCCACAAGGGCACCACGTCGAAAGGACCGAAGATTTCCACTTCTCCTCTCCACAAGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGGCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTGCTGAATTGGACATGGTCAAGCTGGTCATAGCTCCATTTCCTCGTGTTAAGCGTCCCGACTCCGATTTTGTTGATGATGGCAGCGATGTGGAACCCCTACTGTCACTCCCAGAATTCGGAGATTTCCCTCTTTCTTCGCCGGATATATTCTATGGTCCTCCCTCGGTGAGCGGTGTGCGGTTTTCGCCAGCCAACATTGAGCTCAAGTTTAGCAAGCATGCTCGTACGGTTCCGGACAAGTTCACTCTAGGAGAGCTTTGGGACATGACTGAGGGTAACAGAGTTTCATATGACTTCTTTGGATGGATTGCAAGTAAGCTGGAATGGGGACTTCTGTATGTTCTTGCAAGGAATGAGGATGGTTTTCTATCTAAAGAAGCTGTGAGACGCTGCTTTGATGGAAGCTTATTCGGGTACTGTGCCAAGATGAATGCAAGTGCTGAAGCTAAGATGGGCTGA

Protein Analysis

264

Amino Acids

29.28

Weight (kDa)

9.69

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 172 - 252 3.6e-26 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 143, 200
AccBSI CCGCTC 2 cut(s) 133, 507
AccI GTMKAC 1 cut(s) 267
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 3 cut(s) 131, 507, 514
AcsI RAATTY 2 cut(s) 285, 449
AfaI GTAC 2 cut(s) 562, 752
AfiI CCNNNNNNNGG 2 cut(s) 15, 452
AgsI TTSAA 1 cut(s) 154
AjiI CACGTC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 14
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 8 cut(s) 358, 368, 538, 592, 655, 716, 741, 782
AluI AGCT 8 cut(s) 358, 368, 538, 592, 655, 716, 741, 782
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 1 cut(s) 715
AlwNI CAGNNNCTG 1 cut(s) 335
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 2 cut(s) 51, 278
ApeKI GCWGC 3 cut(s) 46, 417, 726
ApoI RAATTY 2 cut(s) 285, 449
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspS9I GGNCC 4 cut(s) 158, 215, 279, 491
AsuHPI GGTGA 2 cut(s) 260, 514
AvaII GGWCC 3 cut(s) 158, 215, 491
BaeGI GKGCMC 3 cut(s) 98, 146, 203
BanI GGYRCC 3 cut(s) 95, 143, 200
BanII GRGCYC 1 cut(s) 540
BauI CACGAG 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 540
BbvI GCAGC 3 cut(s) 33, 429, 713
BccI CCATC 5 cut(s) 407, 633, 689, 728, 781
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 715
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 3 cut(s) 47, 418, 727
BlsI GCNGC 3 cut(s) 48, 419, 728
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 3 cut(s) 158, 215, 491
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 4 cut(s) 158, 215, 279, 491
BmiI GGNNCC 5 cut(s) 97, 145, 202, 429, 567
BmrFI CCNGG 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 524
BsaJI CCNNGG 2 cut(s) 15, 498
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 452
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 15, 498
BseGI GGATG 2 cut(s) 644, 700
BseLI CCNNNNNNNGG 2 cut(s) 15, 452
BseMII CTCAG 2 cut(s) 173, 597
BseRI GAGGAG 2 cut(s) 168, 225
BseSI GKGCMC 3 cut(s) 98, 146, 203
BseXI GCAGC 3 cut(s) 33, 429, 713
BshFI GGCC 2 cut(s) 53, 280
BshNI GGYRCC 3 cut(s) 95, 143, 200
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 476, 569
BsiWI CGTACG 1 cut(s) 560
BslFI GGGAC 3 cut(s) 375, 611, 678
BslI CCNNNNNNNGG 2 cut(s) 15, 452
BsmAI GTCTC 1 cut(s) 715
BsmBI CGTCTC 1 cut(s) 715
BsmFI GGGAC 3 cut(s) 375, 611, 678
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 2 cut(s) 53, 280
Bsp1286I GDGCHC 4 cut(s) 98, 146, 203, 540
Bsp13I TCCGGA 1 cut(s) 568
BspACI CCGC 3 cut(s) 131, 507, 514
BspANI GGCC 2 cut(s) 53, 280
BspCNI CTCAG 2 cut(s) 174, 598
BspEI TCCGGA 1 cut(s) 568
BspLI GGNNCC 5 cut(s) 97, 145, 202, 429, 567
BspMAI CTGCAG 1 cut(s) 51
BspT107I GGYRCC 3 cut(s) 95, 143, 200
BsrBI CCGCTC 2 cut(s) 133, 507
BssECI CCNNGG 2 cut(s) 15, 498
BssSI CACGAG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 4 cut(s) 325, 438, 565, 755
BstC8I GCNNGC 5 cut(s) 51, 336, 525, 551, 555
BstDEI CTNAG 3 cut(s) 182, 606, 783
BstF5I GGATG 2 cut(s) 644, 700
BstMAI GTCTC 1 cut(s) 715
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 3 cut(s) 98, 146, 203
BstV1I GCAGC 3 cut(s) 33, 429, 713
BsuRI GGCC 2 cut(s) 53, 280
BtgZI GCGATG 1 cut(s) 435
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 644, 700
BtsIMutI CAGTG 2 cut(s) 330, 336
Cac8I GCNNGC 5 cut(s) 51, 336, 525, 551, 555
CaiI CAGNNNCTG 1 cut(s) 335
Cfr13I GGNCC 4 cut(s) 158, 215, 279, 491
CseI GACGC 2 cut(s) 377, 732
Csp6I GTAC 2 cut(s) 561, 751
CviAII CATG 4 cut(s) 263, 349, 554, 601
CviQI GTAC 2 cut(s) 561, 751
DdeI CTNAG 3 cut(s) 182, 606, 783
Ecl136II GAGCTC 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 540
Eco47I GGWCC 3 cut(s) 158, 215, 491
Eco53kI GAGCTC 1 cut(s) 538
EcoICRI GAGCTC 1 cut(s) 538
EcoRI GAATTC 2 cut(s) 285, 449
EcoRII CCWGG 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 540
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 4 cut(s) 266, 352, 557, 604
FaqI GGGAC 3 cut(s) 375, 611, 678
FatI CATG 4 cut(s) 262, 348, 553, 600
FauNDI CATATG 1 cut(s) 625
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 47, 418, 727
FokI GGATG 2 cut(s) 651, 707
FriOI GRGCYC 1 cut(s) 540
Fsp4HI GCNGC 3 cut(s) 47, 418, 727
FspBI CTAG 1 cut(s) 584
GluI GCNGC 3 cut(s) 47, 418, 727
HaeIII GGCC 2 cut(s) 53, 280
HapII CCGG 2 cut(s) 476, 569
HgaI GACGC 2 cut(s) 377, 732
Hin1II CATG 4 cut(s) 266, 352, 557, 604
HindIII AAGCTT 1 cut(s) 739
HinfI GANTC 4 cut(s) 28, 36, 184, 395
HpaII CCGG 2 cut(s) 476, 569
HphI GGTGA 2 cut(s) 260, 514
Hpy166II GTNNAC 2 cut(s) 268, 579
Hpy188I TCNGA 3 cut(s) 183, 400, 455
Hpy188III TCNNGA 5 cut(s) 9, 73, 290, 392, 569
Hpy8I GTNNAC 2 cut(s) 268, 579
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 15, 18, 135
HpyCH4III ACNGT 4 cut(s) 325, 438, 565, 755
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 4 cut(s) 49, 647, 683, 770
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 3 cut(s) 182, 606, 783
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 4 cut(s) 266, 352, 557, 604
Kpn2I TCCGGA 1 cut(s) 568
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 3 cut(s) 33, 429, 713
MaeI CTAG 1 cut(s) 584
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 4 cut(s) 248, 290, 438, 611
MbiI CCGCTC 2 cut(s) 133, 507
MboII GAAGA 3 cut(s) 175, 232, 462
MhlI GDGCHC 4 cut(s) 98, 146, 203, 540
MluCI AATT 3 cut(s) 285, 341, 449
MlyI GAGTC 2 cut(s) 193, 389
MroI TCCGGA 1 cut(s) 568
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 2 cut(s) 476, 569
MspR9I CCNGG 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeI CATATG 1 cut(s) 625
NlaIII CATG 4 cut(s) 266, 352, 557, 604
NlaIV GGNNCC 5 cut(s) 97, 145, 202, 429, 567
NmuCI GTSAC 3 cut(s) 248, 290, 438
NspI RCATGY 1 cut(s) 557
OliI CACNNNNGTG 1 cut(s) 246
PaeI GCATGC 1 cut(s) 557
PcsI WCGNNNNNNNCGW 3 cut(s) 28, 215, 385
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 2 cut(s) 28, 36
Pfl23II CGTACG 1 cut(s) 560
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 3 cut(s) 48, 419, 728
PleI GAGTC 2 cut(s) 192, 389
PpsI GAGTC 2 cut(s) 192, 389
Psp124BI GAGCTC 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspLI CGTACG 1 cut(s) 560
PspN4I GGNNCC 5 cut(s) 97, 145, 202, 429, 567
PspPI GGNCC 4 cut(s) 158, 215, 279, 491
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 350
RsaI GTAC 2 cut(s) 562, 752
RsaNI GTAC 2 cut(s) 561, 751
RseI CAYNNNNRTG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 540
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 47, 418, 727
Sau96I GGNCC 4 cut(s) 158, 215, 279, 491
SchI GAGTC 2 cut(s) 193, 389
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 4 cut(s) 98, 146, 203, 540
SetI ASST 9 cut(s) 209, 360, 370, 540, 594, 657, 718, 743, 784
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 3 cut(s) 158, 215, 491
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SphI GCATGC 1 cut(s) 557
Sse9I AATT 3 cut(s) 285, 341, 449
SsiI CCGC 3 cut(s) 131, 507, 514
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 584
SstI GAGCTC 1 cut(s) 540
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 4 cut(s) 325, 438, 565, 755
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 22, 209
TaqII GACCGA 2 cut(s) 175, 232
TasI AATT 3 cut(s) 285, 341, 449
TfiI GAWTC 2 cut(s) 28, 36
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 330, 336
TseFI GTSAC 3 cut(s) 248, 290, 438
TseI GCWGC 3 cut(s) 46, 417, 726
Tsp45I GTSAC 3 cut(s) 248, 290, 438
TspDTI ATGAA 2 cut(s) 612, 779
TspRI CASTG 2 cut(s) 330, 336
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 158, 215, 491
XapI RAATTY 2 cut(s) 285, 449
XceI RCATGY 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.