Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

3799078 .. 3801982

Gene Structure 2905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04450.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTACTCAGTTGATGGAGAATGAAGCTTTGGCAACATCAGCAAAATATGCACCAGTCACTTATGAGAGGAGGGTCAGAGGGGACTTGGAAACCACACTTCCAAAACCATATCTTTCGAGAGCCCTGGCTGCTCCAGACACAAACCATCCCATGGGAACACCTGGACATCACAGCCGCAACTTGAGTGTTCTTCAGCAACATGTTGCATTTTTTGACCAGGACGAAAATGGGATTGTCTACCCTTGGGAAACTTTTGTTGGATGTCGAGCTCTTGGCTTCAACACAATCGCATCTCTTATCCTGGCTGTTGTCATCAATGGGGCACTGAGTTATCCTACTCTTCCTGGGTGGTTTCCTTCTCCGTTCTTGCCCATATACCTTCTAAACATTCACAAGGCTAAGCATGGTAGTGATACTGGAACATATGACACAGAGGGAAGGTTTTCGCCAGCAAATATTGAACAAATGTTTAGCAAGTATGCTCGTACAGAACCTGACAAGTTCACTCTGGGAGAAATTTGGGACATGACCGAGGGAAACAGAGTTTCATTCGACTTCTTTGGATGGTTTGCAAGTAAGCTGGAATGGGGACTTCTGTACGTTCTTGCAAGGGATGAGGAGGGCTTCCTGTCTAAAGAAGCTGTGAGACGCTGCTTCGATGGAAGCTTATTCGAGTATATCGCCAAGATGAATGCAAGAGCTGAAGCTAAGATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

241

Amino Acids

27.02

Weight (kDa)

5.71

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Caleosin	PF05042	61 - 118	3.3e-22	Caleosin related protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	490, 602
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	283, 464
AjnI	CCWGG	5 cut(s)	126, 163, 219, 303, 346
AjuI	GAANNNNNNNTTGG	4 cut(s)	14, 46, 243, 275
AluBI	AGCT	7 cut(s)	29, 272, 583, 644, 669, 704, 710
AluI	AGCT	7 cut(s)	29, 272, 583, 644, 669, 704, 710
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	1 cut(s)	643
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	717
ApeKI	GCWGC	2 cut(s)	131, 654
ApoI	RAATTY	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	328
BanII	GRGCYC	2 cut(s)	127, 274
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	118, 641
BccI	CCATC	5 cut(s)	10, 156, 561, 656, 709
BciT130I	CCWGG	5 cut(s)	128, 165, 221, 305, 348
BcoDI	GTCTC	1 cut(s)	643
BisI	GCNGC	3 cut(s)	132, 178, 655
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	3 cut(s)	133, 179, 656
Bme1390I	CCNGG	5 cut(s)	128, 165, 221, 305, 348
BmrFI	CCNGG	5 cut(s)	128, 165, 221, 305, 348
BmsI	GCATC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	5 cut(s)	126, 153, 245, 347, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	56, 424
BseBI	CCWGG	5 cut(s)	128, 165, 221, 305, 348
BseDI	CCNNGG	5 cut(s)	126, 153, 245, 347, 534
BseGI	GGATG	4 cut(s)	148, 269, 572, 622
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	23, 320
BseNI	ACTGG	2 cut(s)	56, 424
BseRI	GAGGAG	2 cut(s)	85, 635
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	118, 641
BshFI	GGCC	1 cut(s)	719
BsiHKAI	GWGCWC	1 cut(s)	274
BslFI	GGGAC	3 cut(s)	98, 539, 606
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	3 cut(s)	98, 539, 606
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	719
Bsp1286I	GDGCHC	3 cut(s)	127, 274, 328
Bsp1720I	GCTNAGC	1 cut(s)	402
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	2 cut(s)	22, 321
BsrI	ACTGG	2 cut(s)	56, 424
BssECI	CCNNGG	5 cut(s)	126, 153, 245, 347, 534
BssT1I	CCWWGG	2 cut(s)	153, 245
Bst2UI	CCWGG	5 cut(s)	128, 165, 221, 305, 348
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	4 cut(s)	9, 329, 402, 711
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	148, 269, 572, 622
BstMAI	GTCTC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 50, 131, 716
BstNI	CCWGG	5 cut(s)	128, 165, 221, 305, 348
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	5 cut(s)	126, 163, 219, 303, 346
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	118, 641
BsuRI	GGCC	1 cut(s)	719
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	148, 269, 572, 622
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	497
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	489, 601
CviAII	CATG	4 cut(s)	154, 203, 407, 529
CviQI	GTAC	2 cut(s)	489, 601
DdeI	CTNAG	4 cut(s)	9, 329, 402, 711
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	153, 245
Eco24I	GRGCYC	2 cut(s)	127, 274
Eco53kI	GAGCTC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	272
EcoRII	CCWGG	5 cut(s)	126, 163, 219, 303, 346
EcoT14I	CCWWGG	2 cut(s)	153, 245
EcoT38I	GRGCYC	2 cut(s)	127, 274
ErhI	CCWWGG	2 cut(s)	153, 245
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	4 cut(s)	157, 206, 410, 532
FaqI	GGGAC	3 cut(s)	98, 539, 606
FatI	CATG	4 cut(s)	153, 202, 406, 528
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	132, 178, 655
FokI	GGATG	4 cut(s)	135, 276, 579, 629
FriOI	GRGCYC	2 cut(s)	127, 274
Fsp4HI	GCNGC	3 cut(s)	132, 178, 655
GluI	GCNGC	3 cut(s)	132, 178, 655
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	719
HgaI	GACGC	1 cut(s)	660
Hin1II	CATG	4 cut(s)	157, 206, 410, 532
HindIII	AAGCTT	2 cut(s)	27, 667
Hpy166II	GTNNAC	2 cut(s)	241, 507
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	120, 137
Hpy8I	GTNNAC	2 cut(s)	241, 507
HpyAV	CCTTC	3 cut(s)	369, 392, 435
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	5 cut(s)	53, 209, 575, 611, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 50, 131, 716
HpyF3I	CTNAG	4 cut(s)	9, 329, 402, 711
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	4 cut(s)	157, 206, 410, 532
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	118, 641
LweI	GCATC	1 cut(s)	302
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	2 cut(s)	185, 335
MhlI	GDGCHC	3 cut(s)	127, 274, 328
MluCI	AATT	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	63, 66, 74, 430, 529, 613, 616
MroXI	GAANNNNTTC	1 cut(s)	445
MslI	CAYNNNNRTG	1 cut(s)	411
MspR9I	CCNGG	5 cut(s)	128, 165, 221, 305, 348
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	5 cut(s)	128, 165, 221, 305, 348
MwoI	GCNNNNNNNGC	4 cut(s)	41, 50, 131, 716
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	427
NlaIII	CATG	4 cut(s)	157, 206, 410, 532
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	206
PciI	ACATGT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	700
PdmI	GAANNNNTTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	133, 179, 656
PscI	ACATGT	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	274
Psp6I	CCWGG	5 cut(s)	126, 163, 219, 303, 346
PspGI	CCWGG	5 cut(s)	126, 163, 219, 303, 346
PstNI	CAGNNNCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	490, 602
RsaNI	GTAC	2 cut(s)	489, 601
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	274
SatI	GCNGC	3 cut(s)	132, 178, 655
ScrFI	CCNGG	5 cut(s)	128, 165, 221, 305, 348
SduI	GDGCHC	3 cut(s)	127, 274, 328
SfaNI	GCATC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	519
SsiI	CCGC	1 cut(s)	178
SspI	AATATT	1 cut(s)	460
SstI	GAGCTC	1 cut(s)	274
StyD4I	CCNGG	5 cut(s)	126, 163, 219, 303, 346
StyI	CCWWGG	2 cut(s)	153, 245
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	5 cut(s)	119, 268, 555, 660, 675
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	1 cut(s)	519
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	131, 654
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	39, 540, 707
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.