Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Forward (+)

11704448 .. 11709616

Gene Structure 5169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG061700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCTTCCAGAGCCAGGGGTCCAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAATAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACATCTCCTCTCCACAAGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGGCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTTCTGAATTGGACATGGTCAAGCTGGTCATAGCTCCATTTCCTCGTGTTAAGCGTCCCGACTCCGATTTTTGTTATGATGGTAGCGATGTGGAACCCCTACTGTCACTCCCAGAATTCGGAGATCTCCCTCTTCCTTCGCCGGATATATTCTATGGTCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

9.78

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	95, 143
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	228, 392
AfiI	CCNNNNNNNGG	2 cut(s)	15, 395
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	14
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	301, 311
AluI	AGCT	2 cut(s)	301, 311
AoxI	GGCC	2 cut(s)	51, 221
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	228, 392
AspS9I	GGNCC	4 cut(s)	20, 158, 222, 434
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	3 cut(s)	20, 158, 434
BaeGI	GKGCMC	2 cut(s)	98, 146
BanI	GGYRCC	2 cut(s)	95, 143
BauI	CACGAG	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	3 cut(s)	20, 158, 434
BmgT120I	GGNCC	4 cut(s)	20, 158, 222, 434
BmiI	GGNNCC	4 cut(s)	21, 97, 145, 372
BmrFI	CCNGG	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	15, 23, 437
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 395
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	15, 23, 437
BseLI	CCNNNNNNNGG	2 cut(s)	15, 395
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	2 cut(s)	98, 146
BseXI	GCAGC	1 cut(s)	33
BshFI	GGCC	2 cut(s)	53, 223
BshNI	GGYRCC	2 cut(s)	95, 143
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	15, 395
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	53, 223
Bsp1286I	GDGCHC	2 cut(s)	98, 146
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	53, 223
BspLI	GGNNCC	4 cut(s)	21, 97, 145, 372
BspMAI	CTGCAG	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	95, 143
BsrBI	CCGCTC	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	15, 23, 437
BssMI	GATC	1 cut(s)	400
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	268, 381
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	47
BstSLI	GKGCMC	2 cut(s)	98, 146
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	53, 223
BtgZI	GCGATG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	273, 279
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	20, 158, 222, 434
CseI	GACGC	1 cut(s)	320
CviAII	CATG	2 cut(s)	206, 292
CviJI	RGCY	7 cut(s)	14, 53, 61, 103, 223, 301, 311
CviKI_1	RGCY	7 cut(s)	14, 53, 61, 103, 223, 301, 311
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	23
Eco47I	GGWCC	3 cut(s)	20, 158, 434
EcoRI	GAATTC	2 cut(s)	228, 392
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	209, 295
FaiI	YATR	6 cut(s)	207, 293, 308, 354, 425, 432
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	2 cut(s)	205, 291
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	53, 223
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	209, 295
HinfI	GANTC	3 cut(s)	28, 36, 338
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	283, 343, 398
Hpy188III	TCNNGA	4 cut(s)	9, 73, 233, 335
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	15, 135, 288, 423
HpyCH4III	ACNGT	2 cut(s)	268, 381
HpyCH4V	TGCA	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	209, 295
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	1 cut(s)	33
MaeIII	GTNAC	3 cut(s)	191, 233, 381
MalI	GATC	1 cut(s)	402
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	175, 401
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	98, 146
MluCI	AATT	3 cut(s)	228, 284, 392
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	4 cut(s)	72, 189, 330, 417
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	209, 295
NlaIV	GGNNCC	4 cut(s)	21, 97, 145, 372
NmuCI	GTSAC	3 cut(s)	191, 233, 381
OliI	CACNNNNGTG	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	28, 36
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	4 cut(s)	21, 97, 145, 372
PspPI	GGNCC	4 cut(s)	20, 158, 222, 434
PstI	CTGCAG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	400
PsyI	GACNNNGTC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	4 cut(s)	20, 158, 222, 434
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	2 cut(s)	98, 146
SetI	ASST	2 cut(s)	303, 313
SfcI	CTRYAG	1 cut(s)	47
SinI	GGWCC	3 cut(s)	20, 158, 434
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	228, 284, 392
SsiI	CCGC	1 cut(s)	131
SspI	AATATT	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	268, 381
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	3 cut(s)	228, 284, 392
TfiI	GAWTC	2 cut(s)	28, 36
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	273, 279
TseFI	GTSAC	3 cut(s)	191, 233, 381
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	3 cut(s)	191, 233, 381
TspRI	CASTG	2 cut(s)	273, 279
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	3 cut(s)	20, 158, 434
XapI	RAATTY	2 cut(s)	228, 392
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.