RchiOBHm_Chr4g0395071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002731
Physical Location & Seq
Forward (+)
10859819 .. 10865052
5234 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36754

Sequence Viewer

Length: 492 bp
ATGTCTTCCAGAGCCAGGGGTCGAAGGAATCGTGGAATCAAAGTGCTGCAGGCCGAAAAGCCTCTGTTAGTCCAGAAAAAGAATAAGTCTGGGGGCACCAAGCCAAACCAACCAAAGATAATCCCTTCTCCGCTCAAAAAGGGCACCAAGTTGAAAGGACCGAAGATTTCCACTTCTCCTCTCCACAAGGGCACCAAGTCAGAGGAATCCAAGTTATCCGCTGCACCTTCCCCCTCGGGTGACAACATTTGCCATGTCTACAAATATTGGCCCAGAATTCGTGACGGCAAGCCAGTAGAACCAGAGATTTACACAGTGTCAGTGCCTGCTGAATTGGACATGGTCAAGCTGGTCATAGCTCCATTTCCTCGTGTTAAGCGTCCCGACTCCGATTTTGTTGATGATGGTAGCGATGTGGAACCCCTACTGTCACTCCCAGAATTCGAAGATTTTCCTACTTCTTCGCCGGATATATTCTATGGTCCTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.97

Weight (kDa)

9.65

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 95, 143, 191
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 258
AciI CCGC 2 cut(s) 131, 219
AcsI RAATTY 2 cut(s) 276, 440
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 154
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 349, 359
AluI AGCT 2 cut(s) 349, 359
AlwNI CAGNNNCTG 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 51, 269
ApeKI GCWGC 2 cut(s) 46, 221
ApoI RAATTY 2 cut(s) 276, 440
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
Asp700I GAANNNNTTC 1 cut(s) 450
AspS9I GGNCC 3 cut(s) 158, 270, 482
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 2 cut(s) 158, 482
BaeGI GKGCMC 3 cut(s) 98, 146, 194
BanI GGYRCC 3 cut(s) 95, 143, 191
BauI CACGAG 1 cut(s) 369
BbvI GCAGC 2 cut(s) 33, 208
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 16
BfmI CTRYAG 1 cut(s) 47
BisI GCNGC 2 cut(s) 47, 222
BlsI GCNGC 2 cut(s) 48, 223
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 158, 482
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 158, 270, 482
BmiI GGNNCC 4 cut(s) 97, 145, 193, 420
BmrFI CCNGG 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 15, 234
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 15, 234
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 3 cut(s) 98, 146, 194
BseXI GCAGC 2 cut(s) 33, 208
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 53, 271
BshNI GGYRCC 3 cut(s) 95, 143, 191
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 53, 271
BsoBI CYCGRG 1 cut(s) 235
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 3 cut(s) 98, 146, 194
BspACI CCGC 2 cut(s) 131, 219
BspANI GGCC 2 cut(s) 53, 271
BspLI GGNNCC 4 cut(s) 97, 145, 193, 420
BspMAI CTGCAG 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 3 cut(s) 95, 143, 191
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 15, 234
BssSI CACGAG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 316, 429
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 51, 290, 327
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 47
BstSLI GKGCMC 3 cut(s) 98, 146, 194
BstV1I GCAGC 2 cut(s) 33, 208
BsuRI GGCC 2 cut(s) 53, 271
BtgZI GCGATG 1 cut(s) 426
BtsIMutI CAGTG 2 cut(s) 321, 327
Cac8I GCNNGC 3 cut(s) 51, 290, 327
CaiI CAGNNNCTG 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 158, 270, 482
CseI GACGC 1 cut(s) 368
CviAII CATG 2 cut(s) 254, 340
CviJI RGCY 8 cut(s) 14, 53, 61, 103, 271, 292, 349, 359
CviKI_1 RGCY 8 cut(s) 14, 53, 61, 103, 271, 292, 349, 359
Eco47I GGWCC 2 cut(s) 158, 482
Eco88I CYCGRG 1 cut(s) 235
EcoRI GAATTC 2 cut(s) 276, 440
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 257, 343
FaiI YATR 5 cut(s) 255, 341, 356, 473, 480
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 253, 339
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 47, 222
Fsp4HI GCNGC 2 cut(s) 47, 222
GluI GCNGC 2 cut(s) 47, 222
HaeIII GGCC 2 cut(s) 53, 271
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 368
Hin1II CATG 2 cut(s) 257, 343
HinfI GANTC 4 cut(s) 28, 36, 206, 386
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 202, 391
Hpy188III TCNNGA 4 cut(s) 9, 73, 281, 383
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 18, 135, 237
HpyCH4III ACNGT 2 cut(s) 316, 429
HpyCH4V TGCA 2 cut(s) 49, 224
Hsp92II CATG 2 cut(s) 257, 343
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 2 cut(s) 33, 208
MaeIII GTNAC 3 cut(s) 239, 281, 429
MbiI CCGCTC 1 cut(s) 133
MboII GAAGA 3 cut(s) 175, 453, 458
MhlI GDGCHC 3 cut(s) 98, 146, 194
MluCI AATT 3 cut(s) 276, 332, 440
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 5 cut(s) 72, 189, 196, 244, 378
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
NlaIII CATG 2 cut(s) 257, 343
NlaIV GGNNCC 4 cut(s) 97, 145, 193, 420
NmuCI GTSAC 3 cut(s) 239, 281, 429
NspV TTCGAA 1 cut(s) 444
PcsI WCGNNNNNNNCGW 2 cut(s) 28, 376
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 3 cut(s) 28, 36, 206
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 48, 223
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 4 cut(s) 97, 145, 193, 420
PspPI GGNCC 3 cut(s) 158, 270, 482
PstI CTGCAG 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 2 cut(s) 47, 222
Sau96I GGNCC 3 cut(s) 158, 270, 482
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 3 cut(s) 98, 146, 194
SetI ASST 3 cut(s) 229, 351, 361
SfcI CTRYAG 1 cut(s) 47
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 158, 482
Sse9I AATT 3 cut(s) 276, 332, 440
SsiI CCGC 2 cut(s) 131, 219
SspI AATATT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 2 cut(s) 316, 429
TaqI TCGA 2 cut(s) 22, 444
TaqII GACCGA 1 cut(s) 175
TasI AATT 3 cut(s) 276, 332, 440
TfiI GAWTC 3 cut(s) 28, 36, 206
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 2 cut(s) 321, 327
TseFI GTSAC 3 cut(s) 239, 281, 429
TseI GCWGC 2 cut(s) 46, 221
Tsp45I GTSAC 3 cut(s) 239, 281, 429
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 321, 327
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 158, 482
XapI RAATTY 2 cut(s) 276, 440
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.