Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007570.1

Orthogroup ID

OG0002731

Physical Location & Seq

Genomic Coordinates Reverse (-)

13836 .. 14195

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007570.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgtttagcaagtatgctcgtatggttcctgacaagttcactctaggagagctttgggacatgactgagggaaacagagtttcatacgacttctttggatggattgcaagtaagctggaatggggacttctgtatgttctcgcaagggatgaggagggtttactatctaaagaagctgtgagacgctgctttgatggaagcttattcgagtattgtgccaagatgaatgcaagtgcagaagctaagatgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0004497 GO:0005488 GO:0005509 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016021 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0022414 GO:0031224 GO:0031407 GO:0031408 GO:0032501 GO:0032502 GO:0032787 GO:0034389 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044425 GO:0046394 GO:0046872 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0071614 GO:0071704 GO:0071840 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

84

Amino Acids

9.68

Weight (kDa)

5.07

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33380 AT2G33380 AT4G26740 AT5G55240
fragaria_vesca	FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450 FvH4_4g04450
malus_domestica	MD07G1150700.v1.1 MD13G1220000.v1.1 MD16G1225400.v1.1
prunus_persica	Prupe.1G046800_v2.0.a1
pyrus_communis	pycom13g19460
rosa_chinensis	RchiOBHm_Chr4g0395021 RchiOBHm_Chr4g0395071 RchiOBHm_Chr4g0395111 RchiOBHm_Chr4g0395121
rosa_laevigata	RLG00000009645 RLG00000009648 RLG00000009650
rosa_multiflora	Rmu_co8383771.1_g000001 Rmu_sc0006211.1_g000008 Rmu_sc0007570.1_g000004 Rmu_sc0007891.1_g000013
rosa_roxburghii	Rroxscaffold_5G00340000 Rroxscaffold_5G00340070
rosa_rugosa	Rorug03G0359800.1
rosa_samantha	Rh4AG056500 Rh4AG056600 Rh4BG055300 Rh4BG055500 Rh4BG055700 Rh4CG061400 Rh4CG061700 Rh4DG052800 Rh4DG052900
rosa_wichuraiana	Rw4G004540 Rw4G004560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	5 cut(s)	52, 115, 176, 201, 242
AluI	AGCT	5 cut(s)	52, 115, 176, 201, 242
Alw26I	GTCTC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	3 cut(s)	93, 188, 241
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	27
BseGI	GGATG	2 cut(s)	104, 154
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	255
BslFI	GGGAC	2 cut(s)	71, 138
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	2 cut(s)	71, 138
BsmI	GAATGC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	66, 243
BstF5I	GGATG	2 cut(s)	104, 154
BstMAI	GTCTC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	104, 154
CseI	GACGC	1 cut(s)	192
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	6 cut(s)	52, 115, 176, 201, 242, 252
CviKI_1	RGCY	6 cut(s)	52, 115, 176, 201, 242, 252
DdeI	CTNAG	2 cut(s)	66, 243
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	15, 23, 62, 85, 135
FaqI	GGGAC	2 cut(s)	71, 138
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	2 cut(s)	111, 161
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	1 cut(s)	187
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	39, 161
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	2 cut(s)	39, 161
HpyCH4V	TGCA	3 cut(s)	107, 230, 236
HpyF3I	CTNAG	2 cut(s)	66, 243
Hsp92II	CATG	1 cut(s)	64
LpnPI	CCDG	2 cut(s)	42, 101
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	44
MnlI	CCTC	3 cut(s)	61, 145, 148
Mva1269I	GAATGC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	27
SatI	GCNGC	1 cut(s)	187
SetI	ASST	5 cut(s)	54, 117, 178, 203, 244
SspMI	CTAG	1 cut(s)	44
TaqI	TCGA	1 cut(s)	207
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	72, 239
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.