Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

15237191 .. 15239323

Gene Structure 2133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCAAGCCAAAATCAATTCTTTCTTCAAGCCCTCCTCTTCTTCTTCTATCGCTGCCTCAGTAACAACAGACACAGACGATGGTTTAGCTGTCTGGGAGAACAATCGGAACGCCATCGTCAACACCTACCAGCGTCGATCTGCGATTACCGAAAGAAGTGAAGTGCTTAAAGGATGCATCGAAAAGACGCTGAAGAAAGGATCTTCTTCTGTACCTAAAAATCACAAAAAGAAGCGTAATTATACACAATTCCACTTAGAGTTGGGCCAATCTGATTTTCTTCTCAGACATTGCGCAGAATGTGGAGCTAAGTATGCTCCTGGAGATGAATTAGATGAGAAGAACCATCAAAGTTTTCACAAGGACTATATGTATGGACTCCCTTTTAAGGGTTGGCAGAACGAGAAAGCGTTTACATCACCTTTGTTCATCAAGAACCGCATCGTTATGGTATCAGAAAATGATTCCCCTGCACACAGAAACAAGGTGCAAGAGGTTGTGAAAATGATGGAGGTTGAGTTGGGTGAGGATTGGATTCTTCACCAACATTGTAAGGTTTATCTATTCATATCCTCTCAGAGGATCTCTGGATGTCTAGTTGCTGAACCAATTAAGGAAGCATTTAAGCTCATAGCTTCTCCTGATGATGAAAGACAGTTACAAAAAGAGAGCTCATCCTCGCCTTCAACCTCCATTCAGTTTGGAAACATTGTTCTACAAAGAGAGGTATCGAAAAGATGTCGAACATCAGATGATAGATTAGATAACGGAGTCATTGTATGTGAAGAAGAAGCTAAACCAGCTGTTTGTGGGATTAGAGCGATTTGGGTCTCACCTTCTAATAGAAGAAAAGGCATAGCCACATGGTTACTCGATACCACGAGGGAAAGCTTTTGCAACAATGGGTGCATGCTGGAGAAATCTCAGTTAGCATTTTCACAACCAAGCTCCATAGGAAGATCTTTTGGATCTAAATATTTTGGAACTTGTTCATTCTTACTTTACAAAGCTCAGCTAATTGATACTCACTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

345

Amino Acids

38.99

Weight (kDa)

8.76

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	83 - 121	1.1e-12	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	267 - 299	1.9e-11	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	295
AciI	CCGC	1 cut(s)	439
AclWI	GGATC	3 cut(s)	208, 590, 976
AcuI	CTGAAG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	3 cut(s)	388, 389, 579
AgsI	TTSAA	2 cut(s)	28, 687
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AloI	GAACNNNNNNTCC	2 cut(s)	696, 728
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	3 cut(s)	208, 590, 976
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	988
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	4 cut(s)	411, 533, 536, 825
BanII	GRGCYC	1 cut(s)	674
BauI	CACGAG	1 cut(s)	880
Bbv12I	GWGCWC	1 cut(s)	674
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	74, 122, 354, 502
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	835
BfaI	CTAG	1 cut(s)	596
BglII	AGATCT	1 cut(s)	959
BisI	GCNGC	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	1011
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	164, 186, 450
BpmI	CTGGAG	2 cut(s)	342, 935
Bpu1102I	GCTNAGC	1 cut(s)	1011
BsaI	GGTCTC	1 cut(s)	835
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 762, 792
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 389, 579
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	179, 596, 674
BseLI	CCNNNNNNNGG	3 cut(s)	388, 389, 579
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	5 cut(s)	72, 298, 590, 938, 1025
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	388, 389, 579
BsmAI	GTCTC	1 cut(s)	835
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	835
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	5 cut(s)	137, 200, 582, 959, 968
Bsp1720I	GCTNAGC	1 cut(s)	1011
BspACI	CCGC	1 cut(s)	439
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	5 cut(s)	71, 297, 589, 937, 1024
BspPI	GGATC	3 cut(s)	208, 590, 976
BspTNI	GGTCTC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	289
BssMI	GATC	5 cut(s)	137, 200, 582, 959, 968
BssSI	CACGAG	1 cut(s)	880
Bst2BI	CACGAG	1 cut(s)	880
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	6, 911
BstDEI	CTNAG	7 cut(s)	58, 256, 284, 309, 576, 924, 1011
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	3 cut(s)	179, 596, 674
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	5 cut(s)	140, 203, 585, 962, 971
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	5 cut(s)	137, 200, 582, 959, 968
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 800
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	4 cut(s)	200, 582, 959, 968
BstYI	RGATCY	4 cut(s)	200, 582, 959, 968
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	179, 596, 674
Cac8I	GCNNGC	2 cut(s)	6, 911
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	2 cut(s)	122, 196
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	2 cut(s)	864, 910
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	7 cut(s)	58, 256, 284, 309, 576, 924, 1011
DpnI	GATC	5 cut(s)	139, 202, 584, 961, 970
DpnII	GATC	5 cut(s)	137, 200, 582, 959, 968
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	835
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	672
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	674
FaeI	CATG	2 cut(s)	867, 913
FatI	CATG	2 cut(s)	863, 909
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	186, 603, 661
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	596
FspI	TGCGCA	1 cut(s)	295
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	2 cut(s)	342, 935
HaeIII	GGCC	1 cut(s)	267
HgaI	GACGC	2 cut(s)	122, 196
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	867, 913
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	889
HinfI	GANTC	4 cut(s)	378, 464, 535, 771
HphI	GGTGA	4 cut(s)	411, 533, 536, 825
Hpy166II	GTNNAC	2 cut(s)	121, 414
Hpy188I	TCNGA	6 cut(s)	108, 274, 287, 457, 579, 751
Hpy188III	TCNNGA	3 cut(s)	433, 588, 641
Hpy8I	GTNNAC	2 cut(s)	121, 414
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	693, 846
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4V	TGCA	6 cut(s)	4, 177, 473, 490, 897, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 800
HpyF3I	CTNAG	7 cut(s)	58, 256, 284, 309, 576, 924, 1011
Hsp92II	CATG	2 cut(s)	867, 913
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	5 cut(s)	137, 200, 582, 959, 968
LmnI	GCTCC	3 cut(s)	305, 322, 953
LpnPI	CCDG	9 cut(s)	79, 143, 306, 333, 483, 573, 654, 813, 899
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	3 cut(s)	164, 186, 450
MaeI	CTAG	1 cut(s)	596
MaeIII	GTNAC	3 cut(s)	61, 657, 867
MalI	GATC	5 cut(s)	139, 202, 584, 961, 970
MboI	GATC	5 cut(s)	137, 200, 582, 959, 968
MflI	RGATCY	4 cut(s)	200, 582, 959, 968
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	6 cut(s)	16, 238, 248, 329, 609, 1017
MlyI	GAGTC	2 cut(s)	372, 780
Mph1103I	ATGCAT	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	988
MseI	TTAA	5 cut(s)	168, 387, 612, 624, 1036
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	314, 800
NdeII	GATC	5 cut(s)	137, 200, 582, 959, 968
NlaIII	CATG	2 cut(s)	867, 913
NsbI	TGCGCA	1 cut(s)	295
NsiI	ATGCAT	1 cut(s)	179
NspI	RCATGY	1 cut(s)	913
PaeI	GCATGC	1 cut(s)	913
PdmI	GAANNNNTTC	1 cut(s)	988
PfeI	GAWTC	2 cut(s)	464, 535
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	372, 779
PpsI	GAGTC	2 cut(s)	372, 779
Psp124BI	GAGCTC	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	4 cut(s)	200, 582, 959, 968
PvuII	CAGCTG	1 cut(s)	803
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	674
SaqAI	TTAA	5 cut(s)	168, 387, 612, 624, 1036
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	5 cut(s)	137, 200, 582, 959, 968
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	2 cut(s)	372, 780
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	3 cut(s)	164, 186, 450
SmiMI	CAYNNNNRTG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	913
Sse9I	AATT	6 cut(s)	16, 238, 248, 329, 609, 1017
SsiI	CCGC	1 cut(s)	439
SspI	AATATT	1 cut(s)	977
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	1 cut(s)	674
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	657
TaqI	TCGA	5 cut(s)	136, 180, 731, 742, 873
TasI	AATT	6 cut(s)	16, 238, 248, 329, 609, 1017
TfiI	GAWTC	2 cut(s)	464, 535
Tru1I	TTAA	5 cut(s)	168, 387, 612, 624, 1036
Tru9I	TTAA	5 cut(s)	168, 387, 612, 624, 1036
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	5 cut(s)	342, 418, 556, 663, 981
TspGWI	ACGGA	1 cut(s)	783
XagI	CCTNNNNNAGG	1 cut(s)	577
XceI	RCATGY	1 cut(s)	913
XmnI	GAANNNNTTC	1 cut(s)	988
XspI	CTAG	1 cut(s)	596
Zsp2I	ATGCAT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.