Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

13861351 .. 13864032

Gene Structure 2682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAATCGAAAATCAGTACCTTCTTCAAACCCTCATCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCATCTCCCATTCTCCACGAAGACGACGAATTGAGCATCTGGGAAAAGAAGCAACACCAACAGTTGTCCACCTACAAGCGAAGAGCTCCAAACCCACAATGGAGGGGGAGTGACTGCGGTAGGGATAGCCAATTGGCAAAGACACCCGTTTCAGATGTGGACTCTCCGAGGCCGGAATCGATGGCATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATTTAGACTTGGGTCAGTCTGATTTTCTTCTGCACACTTGTGCCGTTTGCGGGGTCATGTATGTCACTGGAGATCAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTACACCCGCGGAATACAATTTAAGGGTTGGTGCAATGAGAGGGTTGTTTATGAGCCTAAAGTTGGAGGTGGTCGGATTCTTTTGGTGTTGGACAGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAGGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGCTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTCAGCAAGAATTGTAGGCTGTCTGGTTGCTGAACCTATAACAAAAGCACACAAAGTCCTATCGTCTGCAGTTGATGGAAGTTCAAATTCTGCTAGTGCAACAACAAATAAAACAAAGTTATTTTCTCTCCAGTTTGGGGAAATCAAATTTCAGAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTACTTCACGGGTGCTATCATTTGTGAAAAGGAAGCAGTACCCGCTGTCTGCGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAGCACATAGCCACCCACTTACTGGATGCCCTGAGGAAAAATTTCTGCATGGGACTTGTCCTTGAGCACTCTCAGTTGGCATTCTCTCAACTAACATCGGCCGGAAACGCACTGGTATCAAATTATATTGGTGGTGGAAATTTCTTATTGTACAACACAAACAATGTGGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

365

Amino Acids

40.22

Weight (kDa)

9.12

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	101 - 139	1.3e-14	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	289 - 357	3.6e-26	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	940
AccII	CGCG	1 cut(s)	429
AciI	CCGC	6 cut(s)	189, 357, 427, 429, 870, 879
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	1017
AcsI	RAATTY	4 cut(s)	712, 773, 958, 1057
AfaI	GTAC	5 cut(s)	19, 305, 830, 867, 1070
AfiI	CCNNNNNNNGG	4 cut(s)	357, 482, 763, 940
AgsI	TTSAA	3 cut(s)	28, 711, 823
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	158, 294, 574, 908
AluI	AGCT	4 cut(s)	158, 294, 574, 908
Alw21I	GWGCWC	2 cut(s)	160, 987
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	585
AoxI	GGCC	3 cut(s)	242, 1017, 1086
ApoI	RAATTY	4 cut(s)	712, 773, 958, 1057
Asp700I	GAANNNNTTC	1 cut(s)	959
AsuHPI	GGTGA	1 cut(s)	48
AxyI	CCTNAGG	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	160, 987
BccI	CCATC	4 cut(s)	82, 247, 556, 695
BceAI	ACGGC	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	1 cut(s)	880
BlsI	GCNGC	1 cut(s)	881
BmcAI	AGTACT	1 cut(s)	830
BmsI	GCATC	2 cut(s)	117, 934
BoxI	GACNNNNGTC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	3 cut(s)	396, 740, 888
BpuEI	CTTGAG	1 cut(s)	1001
Bsa29I	ATCGAT	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	239, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	357, 482, 763, 940
Bse1I	ACTGG	4 cut(s)	379, 757, 945, 1035
Bse21I	CCTNAGG	1 cut(s)	950
Bse3DI	GCAATG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	239, 427
BseGI	GGATG	2 cut(s)	394, 949
BseLI	CCNNNNNNNGG	4 cut(s)	357, 482, 763, 940
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	5 cut(s)	314, 542, 561, 941, 1004
BseNI	ACTGG	4 cut(s)	379, 757, 945, 1035
BseX3I	CGGCCG	1 cut(s)	1017
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	1020
BshFI	GGCC	3 cut(s)	244, 1019, 1088
BshVI	ATCGAT	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	1020
BsiHKAI	GWGCWC	2 cut(s)	160, 987
BsiSI	CCGG	2 cut(s)	245, 1020
BslFI	GGGAC	1 cut(s)	984
BslI	CCNNNNNNNGG	4 cut(s)	357, 482, 763, 940
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	984
BsmI	GAATGC	1 cut(s)	998
BsnI	GGCC	3 cut(s)	244, 1019, 1088
Bsp1286I	GDGCHC	2 cut(s)	160, 987
Bsp1407I	TGTACA	1 cut(s)	1068
Bsp143I	GATC	2 cut(s)	379, 517
BspACI	CCGC	6 cut(s)	189, 357, 427, 429, 870, 879
BspANI	GGCC	3 cut(s)	244, 1019, 1088
BspCNI	CTCAG	5 cut(s)	313, 541, 562, 942, 1003
BspDI	ATCGAT	1 cut(s)	251
BspFNI	CGCG	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	1068
BsrI	ACTGG	4 cut(s)	379, 757, 945, 1035
BssECI	CCNNGG	2 cut(s)	239, 427
BssMI	GATC	2 cut(s)	379, 517
Bst4CI	ACNGT	3 cut(s)	135, 271, 515
Bst6I	CTCTTC	2 cut(s)	148, 281
BstAUI	TGTACA	1 cut(s)	1068
BstDEI	CTNAG	5 cut(s)	300, 528, 570, 950, 990
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	394, 949
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	2 cut(s)	382, 520
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	379, 517
BstMCI	CGRYCG	1 cut(s)	1020
BstMWI	GCNNNNNNNGC	3 cut(s)	806, 869, 1025
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	1017
Bsu15I	ATCGAT	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	950
BsuRI	GGCC	3 cut(s)	244, 1019, 1088
BsuTUI	ATCGAT	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	394, 949
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	5 cut(s)	276, 372, 520, 586, 1028
CaiI	CAGNNNCTG	1 cut(s)	585
Cfr42I	CCGCGG	1 cut(s)	430
ClaI	ATCGAT	1 cut(s)	251
Csp6I	GTAC	5 cut(s)	18, 304, 829, 866, 1069
CspCI	CAANNNNNGTGG	1 cut(s)	1065
CviAII	CATG	2 cut(s)	364, 967
CviQI	GTAC	5 cut(s)	18, 304, 829, 866, 1069
DdeI	CTNAG	5 cut(s)	300, 528, 570, 950, 990
DpnI	GATC	2 cut(s)	381, 519
DpnII	GATC	2 cut(s)	379, 517
EaeI	YGGCCR	1 cut(s)	1017
EagI	CGGCCG	1 cut(s)	1017
Eam1104I	CTCTTC	2 cut(s)	148, 281
EarI	CTCTTC	2 cut(s)	148, 281
Ecl136II	GAGCTC	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	1017
Eco24I	GRGCYC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	1017
Eco53kI	GAGCTC	1 cut(s)	158
Eco81I	CCTNAGG	1 cut(s)	950
EcoICRI	GAGCTC	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	2 cut(s)	367, 970
FaiI	YATR	9 cut(s)	297, 365, 369, 471, 665, 926, 968, 1044, 1093
FaqI	GGGAC	1 cut(s)	984
FatI	CATG	2 cut(s)	363, 966
FauI	CCCGC	3 cut(s)	350, 434, 877
Fnu4HI	GCNGC	1 cut(s)	880
FokI	GGATG	2 cut(s)	401, 956
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	880
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	1 cut(s)	880
GsuI	CTGGAG	3 cut(s)	396, 740, 888
HaeIII	GGCC	3 cut(s)	244, 1019, 1088
HapII	CCGG	2 cut(s)	245, 1020
Hin1II	CATG	2 cut(s)	367, 970
HinfI	GANTC	4 cut(s)	233, 248, 496, 589
HpaII	CCGG	2 cut(s)	245, 1020
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	141, 232
Hpy188I	TCNGA	6 cut(s)	226, 240, 328, 495, 531, 780
Hpy188III	TCNNGA	2 cut(s)	383, 812
Hpy8I	GTNNAC	2 cut(s)	141, 232
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	4 cut(s)	31, 388, 541, 813
HpyCH4III	ACNGT	3 cut(s)	135, 271, 515
HpyCH4V	TGCA	6 cut(s)	4, 340, 453, 695, 725, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	806, 869, 1025
HpyF3I	CTNAG	5 cut(s)	300, 528, 570, 950, 990
Hsp92II	CATG	2 cut(s)	367, 970
KspI	CCGCGG	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	379, 517
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	163, 814
LweI	GCATC	2 cut(s)	117, 934
MaeI	CTAG	1 cut(s)	720
MaeIII	GTNAC	5 cut(s)	182, 271, 370, 553, 898
MalI	GATC	2 cut(s)	381, 519
MboI	GATC	2 cut(s)	379, 517
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	160, 987
MluCI	AATT	9 cut(s)	101, 203, 437, 636, 712, 773, 958, 1039, 1057
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	463, 473, 489
MroXI	GAANNNNTTC	1 cut(s)	959
MseI	TTAA	2 cut(s)	441, 606
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	2 cut(s)	429, 872
MspI	CCGG	2 cut(s)	245, 1020
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	998
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	806, 869, 1025
NdeII	GATC	2 cut(s)	379, 517
NlaIII	CATG	2 cut(s)	367, 970
NmuCI	GTSAC	5 cut(s)	182, 271, 370, 553, 898
OliI	CACNNNNGTG	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	1 cut(s)	959
PfeI	GAWTC	3 cut(s)	248, 496, 589
PflMI	CCANNNNNTGG	1 cut(s)	940
PkrI	GCNGC	1 cut(s)	881
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	585
RsaI	GTAC	5 cut(s)	19, 305, 830, 867, 1070
RsaNI	GTAC	5 cut(s)	18, 304, 829, 866, 1069
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	160
SacII	CCGCGG	1 cut(s)	430
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	441, 606
SatI	GCNGC	1 cut(s)	880
Sau3AI	GATC	2 cut(s)	379, 517
ScaI	AGTACT	1 cut(s)	830
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	160, 987
SfaNI	GCATC	2 cut(s)	117, 934
SfcI	CTRYAG	1 cut(s)	693
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
Sse9I	AATT	9 cut(s)	101, 203, 437, 636, 712, 773, 958, 1039, 1057
SsiI	CCGC	6 cut(s)	189, 357, 427, 429, 870, 879
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	135, 271, 515
TaqI	TCGA	2 cut(s)	8, 251
TasI	AATT	9 cut(s)	101, 203, 437, 636, 712, 773, 958, 1039, 1057
TatI	WGTACW	2 cut(s)	828, 1068
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	3 cut(s)	248, 496, 589
Tru1I	TTAA	2 cut(s)	441, 606
Tru9I	TTAA	2 cut(s)	441, 606
TscAI	CASTG	5 cut(s)	276, 379, 520, 586, 1035
TseFI	GTSAC	5 cut(s)	182, 271, 370, 553, 898
Tsp45I	GTSAC	5 cut(s)	182, 271, 370, 553, 898
TspRI	CASTG	5 cut(s)	276, 379, 520, 586, 1035
Van91I	CCANNNNNTGG	1 cut(s)	940
XapI	RAATTY	4 cut(s)	712, 773, 958, 1057
XcmI	CCANNNNNNNNNTGG	2 cut(s)	168, 937
XmnI	GAANNNNTTC	1 cut(s)	959
XspI	CTAG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.