Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

21710021 .. 21714085

Gene Structure 4065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTTCTTCTGTTTCACCCAAACCAGCAGACCCACCTCCCATTTTCGACGACGACGGCCAGGAATTGAGCATCTGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATCTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACTTGTTCCGCATGTGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTGGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTGTATCTGTTTGTTTTGTCCGCAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGCTCAAGTTTTGCTAGTACGGCAACACAGAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCCTTTGTGAAAAGGAAGCAGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

320

Amino Acids

35.34

Weight (kDa)

9.03

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	103 - 141	1e-14	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	291 - 320	6.5e-10	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	182, 946
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	435
AciI	CCGC	5 cut(s)	357, 433, 435, 636, 876
AclWI	GGATC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	779
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	3 cut(s)	311, 730, 873
AfiI	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
AgsI	TTSAA	3 cut(s)	28, 448, 829
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	164, 300, 580, 714, 914
AluI	AGCT	5 cut(s)	164, 300, 580, 714, 914
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	1 cut(s)	518
AoxI	GGCC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	779
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AsuHPI	GGTGA	2 cut(s)	51, 533
AxyI	CCTNAGG	1 cut(s)	956
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BccI	CCATC	4 cut(s)	321, 512, 562, 701
BceAI	ACGGC	2 cut(s)	115, 747
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	317, 726
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	123, 940
BoxI	GACNNNNGTC	1 cut(s)	324
BpmI	CTGGAG	3 cut(s)	402, 746, 894
BpuEI	CTTGAG	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	176, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
Bse1I	ACTGG	4 cut(s)	208, 385, 763, 847
Bse21I	CCTNAGG	1 cut(s)	956
Bse3DI	GCAATG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	176, 433
BseGI	GGATG	4 cut(s)	238, 400, 523, 955
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
BseMI	GCAATG	1 cut(s)	466
BseMII	CTCAG	4 cut(s)	320, 548, 567, 947
BseNI	ACTGG	4 cut(s)	208, 385, 763, 847
BseRI	GAGGAG	1 cut(s)	507
BsgI	GTGCAG	2 cut(s)	329, 720
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	166
BslI	CCNNNNNNNGG	5 cut(s)	178, 179, 182, 769, 946
BsmAI	GTCTC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	12, 523
BspACI	CCGC	5 cut(s)	357, 433, 435, 636, 876
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	4 cut(s)	319, 547, 568, 948
BspFNI	CGCG	1 cut(s)	435
BspPI	GGATC	1 cut(s)	518
BspQI	GCTCTTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	466
BsrI	ACTGG	4 cut(s)	208, 385, 763, 847
BssECI	CCNNGG	2 cut(s)	176, 433
BssMI	GATC	2 cut(s)	12, 523
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	262, 277
Bst6I	CTCTTC	4 cut(s)	40, 154, 287, 384
BstACI	GRCGYC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	306, 534, 576, 956
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	238, 400, 523, 955
BstFNI	CGCG	1 cut(s)	435
BstKTI	GATC	2 cut(s)	15, 526
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	2 cut(s)	12, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	731, 812, 875
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	363
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	956
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	4 cut(s)	238, 400, 523, 955
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	4 cut(s)	22, 282, 592, 840
Cfr42I	CCGCGG	1 cut(s)	436
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	310, 729, 872
CviAII	CATG	2 cut(s)	360, 370
CviQI	GTAC	3 cut(s)	310, 729, 872
DdeI	CTNAG	4 cut(s)	306, 534, 576, 956
DpnI	GATC	2 cut(s)	14, 525
DpnII	GATC	2 cut(s)	12, 523
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	4 cut(s)	40, 154, 287, 384
EarI	CTCTTC	4 cut(s)	40, 154, 287, 384
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	956
EcoICRI	GAGCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	363, 373
FaiI	YATR	7 cut(s)	303, 361, 371, 375, 429, 671, 932
FatI	CATG	2 cut(s)	359, 369
FauI	CCCGC	2 cut(s)	440, 883
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	3 cut(s)	245, 407, 530
FriOI	GRGCYC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	317, 726
GsuI	CTGGAG	3 cut(s)	402, 746, 894
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	363, 373
HincII	GTYRAC	2 cut(s)	238, 753
HindII	GTYRAC	2 cut(s)	238, 753
HinfI	GANTC	4 cut(s)	239, 254, 502, 595
HpaI	GTTAAC	1 cut(s)	753
HphI	GGTGA	2 cut(s)	51, 533
Hpy166II	GTNNAC	2 cut(s)	238, 753
Hpy188I	TCNGA	4 cut(s)	232, 334, 501, 537
Hpy188III	TCNNGA	2 cut(s)	317, 818
Hpy8I	GTNNAC	2 cut(s)	238, 753
Hpy99I	CGWCG	3 cut(s)	95, 98, 101
HpyAV	CCTTC	3 cut(s)	31, 394, 819
HpyCH4III	ACNGT	2 cut(s)	262, 277
HpyCH4V	TGCA	4 cut(s)	4, 346, 459, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	731, 812, 875
HpyF3I	CTNAG	4 cut(s)	306, 534, 576, 956
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	363, 373
KspAI	GTTAAC	1 cut(s)	753
KspI	CCGCGG	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	12, 523
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	169, 820
LweI	GCATC	2 cut(s)	123, 940
MaeI	CTAG	2 cut(s)	317, 726
MaeIII	GTNAC	4 cut(s)	277, 376, 559, 904
MalI	GATC	2 cut(s)	14, 525
MboI	GATC	2 cut(s)	12, 523
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	5 cut(s)	107, 140, 443, 642, 779
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	479, 495
MnlI	CCTC	9 cut(s)	43, 90, 385, 459, 485, 488, 531, 537, 951
MseI	TTAA	3 cut(s)	483, 612, 752
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	435, 878
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	731, 812, 875
NdeII	GATC	2 cut(s)	12, 523
NlaIII	CATG	2 cut(s)	363, 373
NmuCI	GTSAC	4 cut(s)	277, 376, 559, 904
NspI	RCATGY	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	254, 502, 595
PflMI	CCANNNNNTGG	2 cut(s)	182, 946
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshAI	GACNNNNGTC	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
RsaI	GTAC	3 cut(s)	311, 730, 873
RsaNI	GTAC	3 cut(s)	310, 729, 872
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	166
SacII	CCGCGG	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	483, 612, 752
Sau3AI	GATC	2 cut(s)	12, 523
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	166
SfaNI	GCATC	2 cut(s)	123, 940
Sfr303I	CCGCGG	1 cut(s)	436
SgrBI	CCGCGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	715
SmoI	CTYRAG	1 cut(s)	715
Sse9I	AATT	5 cut(s)	107, 140, 443, 642, 779
SsiI	CCGC	5 cut(s)	357, 433, 435, 636, 876
SspMI	CTAG	2 cut(s)	317, 726
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	262, 277
TaqI	TCGA	3 cut(s)	90, 237, 257
TasI	AATT	5 cut(s)	107, 140, 443, 642, 779
TfiI	GAWTC	3 cut(s)	254, 502, 595
Tru1I	TTAA	3 cut(s)	483, 612, 752
Tru9I	TTAA	3 cut(s)	483, 612, 752
TscAI	CASTG	4 cut(s)	22, 282, 592, 847
TseFI	GTSAC	4 cut(s)	277, 376, 559, 904
Tsp45I	GTSAC	4 cut(s)	277, 376, 559, 904
TspDTI	ATGAA	2 cut(s)	402, 464
TspRI	CASTG	4 cut(s)	22, 282, 592, 847
Van91I	CCANNNNNTGG	2 cut(s)	182, 946
XapI	RAATTY	1 cut(s)	779
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	317, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.