Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

62225636 .. 62256560

Gene Structure 30925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG466100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATTCAAGAAAAATCACGCGCAATTCTTAATGATGAACTTTCTTTCCATCGTGCCTCTCGAACCTCTAGAGGTTCATTCCACAGAAACTCAGATCGATTCATTCATGTCTCAAAACTAGGAGAGGTTCTTCTCCCCCAAACGAGACAGAAGCTATGTACACACTTCCCGAGCTGGGTTTTGGACAGAGAAGAGTTTTCTCAACCTCTCTCCGAGTTTGTGGCTCTCGTCACTGTTGGTGGAGTTCTTCAATTTGAAGAAAGAACGAGCCCCAAGAATTCATTCACTGTTGTTCATTGTGTCTTTTGGATGGCTAGGTATGTTTCAAGGAGAAGACCTGCTATTGCTTTATTTTTGAAGGTGCATCTGTTTGTTTTGTCTCAAAGGGTTGTGGGCTGTCTGGTTGCAGAACCAATAAAAGAAGCACACAAAGTCCTATCATGTACGGTTTATGGAAGTTCTGATGATACTACTACTAATAAGACAAAAGTAAGTACTTTCGAATTTGGGGACATCAAATTTCGTAGGGAAGTCATTAGAAAACCCCTTTTTGTTCCTGAAGCATTGAATGAGCATCTCAATGGTGCTATAATTTGTAAAAAGGAGGCAGCACCTGCTATCTGCGGTGTTAGAGCCATTTGGGTCACTCGAGCTAACAGAAGAAAGCACATAGCCACTCAGTTACCGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTGCTTGAACGCTCCCAGTTGGCATTTTCTGAACTAACATCTGCTGGAAATGCATTGGCATCAAATTATGTTGGCCGTGACCATGTTCTAGTATACAACACCTTCAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

277

Amino Acids

31.43

Weight (kDa)

9.76

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_13	PF13880	205 - 272	3.9e-24	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	2 cut(s)	346, 622
AccI	GTMKAC	1 cut(s)	813
AccII	CGCG	1 cut(s)	21
AciI	CCGC	1 cut(s)	624
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	3 cut(s)	277, 503, 518
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	160, 445, 496
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	8 cut(s)	8, 251, 257, 327, 358, 568, 728, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AloI	GAACNNNNNNTCC	2 cut(s)	30, 62
AluBI	AGCT	3 cut(s)	154, 174, 653
AluI	AGCT	3 cut(s)	154, 174, 653
Alw26I	GTCTC	3 cut(s)	115, 139, 384
AlwNI	CAGNNNCTG	1 cut(s)	614
Ama87I	CYCGRG	2 cut(s)	169, 648
AoxI	GGCC	1 cut(s)	793
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	3 cut(s)	277, 503, 518
Asp700I	GAANNNNTTC	2 cut(s)	281, 704
AspLEI	GCGC	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	501
AvaI	CYCGRG	2 cut(s)	169, 648
AxyI	CCTNAGG	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	2 cut(s)	57, 304
BceAI	ACGGC	1 cut(s)	780
BcoDI	GTCTC	3 cut(s)	115, 139, 384
BfaI	CTAG	4 cut(s)	69, 119, 315, 809
BfuAI	ACCTGC	2 cut(s)	346, 622
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
BmcAI	AGTACT	1 cut(s)	496
BmeT110I	CYCGRG	2 cut(s)	169, 648
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	4 cut(s)	373, 583, 679, 788
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	501
Bsa29I	ATCGAT	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	736
Bse21I	CCTNAGG	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	97
BseGI	GGATG	2 cut(s)	315, 694
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	105, 686, 692
BseNI	ACTGG	1 cut(s)	736
BseXI	GCAGC	1 cut(s)	620
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	795
BshVI	ATCGAT	1 cut(s)	97
BsiHKCI	CYCGRG	2 cut(s)	169, 648
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	3 cut(s)	115, 139, 384
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	795
BsoBI	CYCGRG	2 cut(s)	169, 648
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	624
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	3 cut(s)	104, 687, 691
BspDI	ATCGAT	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	21
BspMI	ACCTGC	2 cut(s)	346, 622
BspT104I	TTCGAA	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	736
BssMI	GATC	1 cut(s)	94
BssNAI	GTATAC	1 cut(s)	814
Bst1107I	GTATAC	1 cut(s)	814
Bst4CI	ACNGT	3 cut(s)	235, 289, 448
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	91, 678, 695
BstF5I	GGATG	2 cut(s)	315, 694
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	3 cut(s)	115, 139, 384
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 770
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	620
BstV2I	GAAGAC	1 cut(s)	340
BstZ17I	GTATAC	1 cut(s)	814
Bsu15I	ATCGAT	1 cut(s)	97
Bsu36I	CCTNAGG	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	795
BsuTUI	ATCGAT	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	315, 694
BtsIMutI	CAGTG	2 cut(s)	231, 285
BveI	ACCTGC	2 cut(s)	346, 622
CaiI	CAGNNNCTG	1 cut(s)	614
CfoI	GCGC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	159, 444, 495
CviAII	CATG	4 cut(s)	107, 441, 712, 803
CviQI	GTAC	3 cut(s)	159, 444, 495
DdeI	CTNAG	3 cut(s)	91, 678, 695
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	579
Eco81I	CCTNAGG	1 cut(s)	695
Eco88I	CYCGRG	2 cut(s)	169, 648
EcoRI	GAATTC	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	4 cut(s)	110, 444, 715, 806
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	4 cut(s)	106, 440, 711, 802
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	2 cut(s)	322, 701
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	4 cut(s)	69, 119, 315, 809
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	609
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	110, 444, 715, 806
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	4, 99
HpaII	CCGG	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	161, 814
Hpy188I	TCNGA	4 cut(s)	94, 214, 463, 751
Hpy188III	TCNNGA	5 cut(s)	8, 60, 69, 169, 557
Hpy8I	GTNNAC	2 cut(s)	161, 814
HpyAV	CCTTC	2 cut(s)	352, 832
HpyCH4III	ACNGT	3 cut(s)	235, 289, 448
HpyCH4V	TGCA	4 cut(s)	364, 407, 711, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 770
HpyF3I	CTNAG	3 cut(s)	91, 678, 695
Hsp92II	CATG	4 cut(s)	110, 444, 715, 806
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	737
LpnPI	CCDG	9 cut(s)	160, 351, 386, 570, 627, 699, 707, 749, 750
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	4 cut(s)	373, 583, 679, 788
MaeI	CTAG	4 cut(s)	69, 119, 315, 809
MaeIII	GTNAC	4 cut(s)	229, 643, 681, 797
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	6 cut(s)	122, 203, 239, 269, 345, 672
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	7 cut(s)	24, 251, 277, 503, 518, 591, 784
MnlI	CCTC	7 cut(s)	65, 67, 76, 118, 216, 598, 690
Mph1103I	ATGCAT	1 cut(s)	775
MroXI	GAANNNNTTC	2 cut(s)	281, 704
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	1 cut(s)	686
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	614, 770
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	110, 444, 715, 806
NmuCI	GTSAC	3 cut(s)	229, 643, 797
NsiI	ATGCAT	1 cut(s)	775
NspV	TTCGAA	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PdmI	GAANNNNTTC	2 cut(s)	281, 704
PfeI	GAWTC	2 cut(s)	4, 99
PkrI	GCNGC	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	614
RsaI	GTAC	3 cut(s)	160, 445, 496
RsaNI	GTAC	3 cut(s)	159, 444, 495
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	496
SduI	GDGCHC	1 cut(s)	272
SfaNI	GCATC	4 cut(s)	373, 583, 679, 788
Sfr274I	CTCGAG	1 cut(s)	648
SfuI	TTCGAA	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	648
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	7 cut(s)	24, 251, 277, 503, 518, 591, 784
SsiI	CCGC	1 cut(s)	624
SspMI	CTAG	4 cut(s)	69, 119, 315, 809
TaaI	ACNGT	3 cut(s)	235, 289, 448
TaqI	TCGA	4 cut(s)	61, 97, 501, 649
TasI	AATT	7 cut(s)	24, 251, 277, 503, 518, 591, 784
TatI	WGTACW	2 cut(s)	158, 494
TfiI	GAWTC	2 cut(s)	4, 99
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	238, 292
TseFI	GTSAC	3 cut(s)	229, 643, 797
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	3 cut(s)	229, 643, 797
TspDTI	ATGAA	6 cut(s)	51, 66, 91, 95, 270, 284
TspRI	CASTG	2 cut(s)	238, 292
XapI	RAATTY	3 cut(s)	277, 503, 518
XbaI	TCTAGA	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	648
XmiI	GTMKAC	1 cut(s)	813
XmnI	GAANNNNTTC	2 cut(s)	281, 704
XspI	CTAG	4 cut(s)	69, 119, 315, 809
ZrmI	AGTACT	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.