Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

21518367 .. 21520695

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCAATCAAAGATCAGTGCCTTCTTCAAACCCTCTTCTTCTTCTTCTGTTTCCCCCAAACCAGCAGACCCACCTCCTATTTTCGACGACGACGGCCAGGAATTGAGCATATGGGAAAAGAAGCAACACCAACAATTCTCCACCTACAAGCGAAGAGCTCCAAACCCACCAAGGGGTGGGAGTGAGTGTAGTTGGGATAACCAGTTGGCAAAGACACCCATTTCGGATGTCGACTCTCCCAAGCCTGAATCGACAGTATTGGGAAAGACAGTGACCAAGAACAAGAAGAGAAGCTATGCTCAGTACCATTTAGACTTGGGTCAGTCTGACTTTCTTCTGCACACGTGTTCAGCGTGCGGCGTCATGTATGTGACTGGAGATGAAGAGGATGAGAAGGCTCACAAGGGATTTCACAATGACTATACCCGCGGAATACAATTCAAGGGTTGGTGCAATGAGAGGGTTGTTCATTCGCTTAAAGTTGGAGGAGGTCGGATTCTTTTGGTGTTGGATGGTGATCCTCCTGCTCAGAGGAACAAGGTTGAGAAAGTTGTGACAATGATGGAGACTGAGCTTGGCAGTGGGTGGATTCTGCCCAAGTTGTTTAAGGTATATCTGTTTGTTTTGTCCACAAGAATTGTAGGCTGTCTGGTTGCCGAACCTATAACAAAAGCACACAAAGTCCTATCTTGTGCAGTTGATGGAAGCTCAGGTTCTGCTAGTACGGCAACAAATAAAACAAAGTTAACTACTCTCCAGTTTGGGGAAATCAAATTTCACAGGGAAGTCATTAGAAAAGCCCCTTCTGCTCCTGAACCATTGAATGAGTGTTTCACTGGTGCTATCGTTTGTGAAAAGGAAGCTGTACCCGCTGTCTGTGGCATTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAACACATAGCCACCCACTTATTGGATGCCCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

318

Amino Acids

35.08

Weight (kDa)

9.03

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3	PF13878	101 - 139	9.9e-15	zinc-finger of acetyl-transferase ESCO
Acetyltransf_13	PF13880	289 - 318	6.4e-10	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	176, 940
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	429
AciI	CCGC	4 cut(s)	357, 427, 429, 870
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	773
AcvI	CACGTG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	3 cut(s)	305, 724, 867
AfiI	CCNNNNNNNGG	5 cut(s)	172, 173, 176, 763, 940
AflIII	ACRYGT	2 cut(s)	342, 344
AgsI	TTSAA	3 cut(s)	28, 442, 823
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	6 cut(s)	158, 294, 574, 708, 863, 908
AluI	AGCT	6 cut(s)	158, 294, 574, 708, 863, 908
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	773
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsuHPI	GGTGA	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	160
BccI	CCATC	3 cut(s)	506, 556, 695
BceAI	ACGGC	2 cut(s)	109, 741
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	720
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	934
BoxI	GACNNNNGTC	1 cut(s)	318
BpmI	CTGGAG	3 cut(s)	396, 740, 888
Bpu10I	CCTNAGC	1 cut(s)	709
BsaAI	YACGTR	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	170, 427
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 173, 176, 763, 940
Bse1I	ACTGG	4 cut(s)	202, 379, 757, 841
Bse21I	CCTNAGG	1 cut(s)	950
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	170, 427
BseGI	GGATG	4 cut(s)	232, 394, 517, 949
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	5 cut(s)	172, 173, 176, 763, 940
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	5 cut(s)	314, 542, 561, 723, 941
BseNI	ACTGG	4 cut(s)	202, 379, 757, 841
BseRI	GAGGAG	1 cut(s)	501
BsgI	GTGCAG	2 cut(s)	323, 714
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	5 cut(s)	172, 173, 176, 763, 940
BsmAI	GTCTC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	12, 517
BspACI	CCGC	4 cut(s)	357, 427, 429, 870
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	5 cut(s)	313, 541, 562, 722, 942
BspFNI	CGCG	1 cut(s)	429
BspPI	GGATC	1 cut(s)	512
BspQI	GCTCTTC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	4 cut(s)	202, 379, 757, 841
BssECI	CCNNGG	2 cut(s)	170, 427
BssMI	GATC	2 cut(s)	12, 517
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	256, 271
Bst6I	CTCTTC	4 cut(s)	40, 148, 281, 378
BstACI	GRCGYC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	5 cut(s)	300, 528, 570, 709, 950
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	4 cut(s)	232, 394, 517, 949
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	2 cut(s)	15, 520
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	12, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	725, 806, 869
BstNI	CCWGG	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	429
Bsu36I	CCTNAGG	1 cut(s)	950
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	232, 394, 517, 949
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	4 cut(s)	22, 276, 586, 834
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr42I	CCGCGG	1 cut(s)	430
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	3 cut(s)	304, 723, 866
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	3 cut(s)	304, 723, 866
DdeI	CTNAG	5 cut(s)	300, 528, 570, 709, 950
DpnI	GATC	2 cut(s)	14, 519
DpnII	GATC	2 cut(s)	12, 517
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	4 cut(s)	40, 148, 281, 378
EarI	CTCTTC	4 cut(s)	40, 148, 281, 378
Ecl136II	GAGCTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	158
Eco72I	CACGTG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	950
EcoICRI	GAGCTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	367
FaiI	YATR	9 cut(s)	110, 112, 297, 365, 369, 423, 613, 665, 926
FatI	CATG	1 cut(s)	363
FauI	CCCGC	2 cut(s)	434, 877
FauNDI	CATATG	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	3 cut(s)	239, 401, 524
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	358
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	1 cut(s)	358
GsuI	CTGGAG	3 cut(s)	396, 740, 888
HaeIII	GGCC	1 cut(s)	96
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	367
HincII	GTYRAC	2 cut(s)	232, 747
HindII	GTYRAC	2 cut(s)	232, 747
HinfI	GANTC	4 cut(s)	233, 248, 496, 589
HpaI	GTTAAC	1 cut(s)	747
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	3 cut(s)	232, 630, 747
Hpy188I	TCNGA	4 cut(s)	226, 328, 495, 531
Hpy188III	TCNNGA	1 cut(s)	812
Hpy8I	GTNNAC	3 cut(s)	232, 630, 747
Hpy99I	CGWCG	3 cut(s)	89, 92, 95
HpyAV	CCTTC	3 cut(s)	31, 388, 813
HpyCH4III	ACNGT	2 cut(s)	256, 271
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	4 cut(s)	4, 340, 453, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	725, 806, 869
HpyF3I	CTNAG	5 cut(s)	300, 528, 570, 709, 950
HpySE526I	ACGT	1 cut(s)	344
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	367
KspAI	GTTAAC	1 cut(s)	747
KspI	CCGCGG	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	12, 517
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	163, 814
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	4 cut(s)	271, 370, 553, 898
MalI	GATC	2 cut(s)	14, 519
MboI	GATC	2 cut(s)	12, 517
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	5 cut(s)	101, 134, 437, 636, 773
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	463, 473, 489
MnlI	CCTC	9 cut(s)	43, 84, 379, 453, 479, 482, 525, 531, 945
MseI	TTAA	3 cut(s)	477, 606, 746
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	429, 872
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	725, 806, 869
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	2 cut(s)	12, 517
NlaIII	CATG	1 cut(s)	367
NmuCI	GTSAC	4 cut(s)	271, 370, 553, 898
PciSI	GCTCTTC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	248, 496, 589
PflMI	CCANNNNNTGG	2 cut(s)	176, 940
PkrI	GCNGC	1 cut(s)	359
PleI	GAGTC	1 cut(s)	227
PmaCI	CACGTG	1 cut(s)	345
PmlI	CACGTG	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	345
PshAI	GACNNNNGTC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	305, 724, 867
RsaNI	GTAC	3 cut(s)	304, 723, 866
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	160
SacII	CCGCGG	1 cut(s)	430
SalI	GTCGAC	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	477, 606, 746
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	12, 517
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	1 cut(s)	934
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	5 cut(s)	101, 134, 437, 636, 773
SsiI	CCGC	4 cut(s)	357, 427, 429, 870
SspMI	CTAG	1 cut(s)	720
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	2 cut(s)	256, 271
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	3 cut(s)	84, 231, 251
TasI	AATT	5 cut(s)	101, 134, 437, 636, 773
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	248, 496, 589
Tru1I	TTAA	3 cut(s)	477, 606, 746
Tru9I	TTAA	3 cut(s)	477, 606, 746
TscAI	CASTG	4 cut(s)	22, 276, 586, 841
TseFI	GTSAC	4 cut(s)	271, 370, 553, 898
Tsp45I	GTSAC	4 cut(s)	271, 370, 553, 898
TspDTI	ATGAA	2 cut(s)	396, 458
TspRI	CASTG	4 cut(s)	22, 276, 586, 841
Van91I	CCANNNNNTGG	2 cut(s)	176, 940
XapI	RAATTY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.