Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Forward (+)

11089999 .. 11091122

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001160

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCGTATTGTCCACCTTCGTGTCTTTTGGATGGCTAGGTATGTTTCAAGGAGGAGACCTGCTATTGCTATATTTTTGAAGGTGCATCTGTTTGTTATGTCTCAAAGGGTTGTGGGCTGTCTGGTTGCAGAACCAATAAAAGAAGCACACAAAGTCCTATCATGTACGGTTTGTGGAAGTTCTGATGGTAGTACTACTGATAAGACAAAAGAAAGTGCTTTCGAATTTGGGGACATCAAATTTCGTAGGGAAGTCATTAGAAAACCCCTTTTTGTTCCTGAAGCATTGAATGAGCATCTCAATGGTGCCATCATTTGTAAAAAGGAGGCAGTGCCTGCTATCTGCGGTGTTAGAGCCATTTGGGTCACTCCAGCTAACAGAAGAAAGCAAATAGCCAGTCAGTTACTGGATGCCCTGAGGAAAAGTTTCTGCATGGGATTTGTGCTTGAATGCTCGCAGTTGGCATTTTCTGAATTAACATCTGCTGGAAATGCATTGGCATCAAATTATGTTGGCCGTGACCATGTTCTAGTGTACAACACCTTCAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

185

Amino Acids

20.62

Weight (kDa)

9.64

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_13	PF13880	111 - 179	5e-26	ESCO1/2 acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	305
AciI	CCGC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	224, 239
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	3 cut(s)	166, 193, 536
AgsI	TTSAA	5 cut(s)	48, 79, 289, 449, 547
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	49, 105
AlwNI	CAGNNNCTG	2 cut(s)	335, 406
AoxI	GGCC	1 cut(s)	514
ApoI	RAATTY	2 cut(s)	224, 239
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
Asp700I	GAANNNNTTC	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	222
AxyI	CCTNAGG	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	305
BarI	GAAGNNNNNNTAC	1 cut(s)	527
BccI	CCATC	3 cut(s)	25, 179, 317
BceAI	ACGGC	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	49, 105
BfaI	CTAG	2 cut(s)	36, 530
BfuAI	ACCTGC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	307
BmsI	GCATC	4 cut(s)	94, 304, 400, 509
BpmI	CTGGAG	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	396, 411
Bse21I	CCTNAGG	1 cut(s)	416
BseGI	GGATG	2 cut(s)	36, 415
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	396, 411
BseRI	GAGGAG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	516
BshNI	GGYRCC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	49, 105
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	516
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	534
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	516
BspCNI	CTCAG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	396, 411
Bst4CI	ACNGT	1 cut(s)	169
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	336, 455
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	2 cut(s)	36, 415
BstMAI	GTCTC	2 cut(s)	49, 105
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 491
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	36, 415
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	336, 455
CaiI	CAGNNNCTG	2 cut(s)	335, 406
Csp6I	GTAC	3 cut(s)	165, 192, 535
CviAII	CATG	3 cut(s)	162, 433, 524
CviJI	RGCY	6 cut(s)	35, 117, 356, 374, 395, 516
CviKI_1	RGCY	6 cut(s)	35, 117, 356, 374, 395, 516
CviQI	GTAC	3 cut(s)	165, 192, 535
DdeI	CTNAG	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	496
FaeI	CATG	3 cut(s)	165, 436, 527
FaiI	YATR	8 cut(s)	42, 71, 98, 163, 434, 510, 525, 553
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	3 cut(s)	161, 432, 523
FokI	GGATG	2 cut(s)	43, 422
FspBI	CTAG	2 cut(s)	36, 530
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	165, 436, 527
Hpy166II	GTNNAC	2 cut(s)	13, 535
Hpy188I	TCNGA	2 cut(s)	184, 472
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	2 cut(s)	13, 535
HpyAV	CCTTC	3 cut(s)	26, 73, 553
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	85, 128, 432, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 491
HpyF3I	CTNAG	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	165, 436, 527
LpnPI	CCDG	9 cut(s)	72, 107, 291, 348, 384, 392, 409, 428, 471
LweI	GCATC	4 cut(s)	94, 304, 400, 509
MaeI	CTAG	2 cut(s)	36, 530
MaeIII	GTNAC	3 cut(s)	364, 402, 518
MboII	GAAGA	1 cut(s)	393
MluCI	AATT	4 cut(s)	224, 239, 473, 505
MnlI	CCTC	3 cut(s)	45, 319, 411
Mph1103I	ATGCAT	1 cut(s)	496
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	476
MslI	CAYNNNNRTG	2 cut(s)	18, 300
Mva1269I	GAATGC	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	335, 491
NlaIII	CATG	3 cut(s)	165, 436, 527
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	2 cut(s)	364, 518
NsiI	ATGCAT	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	18
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	307
PstNI	CAGNNNCTG	2 cut(s)	335, 406
RsaI	GTAC	3 cut(s)	166, 193, 536
RsaNI	GTAC	3 cut(s)	165, 192, 535
RseI	CAYNNNNRTG	2 cut(s)	18, 300
SaqAI	TTAA	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	193
SetI	ASST	6 cut(s)	18, 41, 61, 84, 376, 545
SfaNI	GCATC	4 cut(s)	94, 304, 400, 509
SfuI	TTCGAA	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	18, 300
Sse9I	AATT	4 cut(s)	224, 239, 473, 505
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	36, 530
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	224, 239, 473, 505
TatI	WGTACW	2 cut(s)	191, 534
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	364, 518
Tsp45I	GTSAC	2 cut(s)	364, 518
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	224, 239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	2 cut(s)	36, 530
ZrmI	AGTACT	1 cut(s)	193
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.