Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

15240623 .. 15504940

Gene Structure 264318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGTATACATATCTCACATGACATTCTCGTATAATCAATTTTGTTACTTTTGCTTTCTTATAAGTACAATTACTTGGCTGGTTTTGATCAGGCGGATCGTGGTGTATCCAAAAGGGAGCAATGGGAGGCAATACTTGTCCATGTACTTGAACGTTGCAGATGCTTCAAAGTTACCATCTGGGTGGAGTCGATATGCCGAGTTCACCTTGACTGTCGTTAATCAATTTAACAGCGACAAATCGATAACAATAGACACTCAGCATCAGTTTAGTGCAAAAAAAAGTGACTGGGGCTTCACATCATTCATGCCTCTGAGTGAGCTTTTTGACCAGAGTGAAGGGTATATCGTGGATGACATATGTATTGTTGAAGCTGAGGTTGCAGTCAGTAAAGCTGACATTAAGGTCCTAAAAGACCAAGAAACTGCCTTTCTTGAGCAGGAACTTCAAAGTCAGTCTTCAGATGTGGATTCTGTGAAATATTCAGAATCTTCAACAGCACATACATCACTTTGTTATGAACAGATGCTTGCTGATGCACCAAATTCTGACCCTGTTCGAACAAATGTTGATTCTGTGCATGTTCCACCCTTGAAAATAGAACCAAGATCTGATCAAGTGCTTCCTTACCAGGAGGCTGATAGCCCAGTTGGCCCTCCCATAGTCGAGGAAGGCGATGAATCTCCCTCCACCCCAGTTAGCGAGATCATCAATTTCAGGGGATTAGGGAAAATAGATAAAGCTTTTGTTCCACTGCTGGAAGAAGTCTGTTTGTGGCATCCTTCGTTGATTAGCTGCCAGAGGAAGAGAAGTCGCATGTTTAGTGAATGGGCATTCACAGCTTTGGGTCGACTATTGCATTTTCTGAACACTACAAAGGTTCAGGATATGATGGAGGATTCATGTGAACATGATCCATGTGAGCATCTTCAAGTTTTGTGGGAGGAGGTTGAGACCTTCAGATTTGACTTGAGTTGGCTGGAGCCTTTTGTTCAATCAGCTTTGGGAATGAAGAAGTTTGGGGAGAAGGAAGGAGTATTAAAAAAACTCACAGGGGATGTTGTTGCTTTGGAGACTGAAATGAAGAGGTTAAGGCGGAGGCTAGCTGTTGCCGAGCTAGATCACGCGGTTGCAAAAATTGACCTGGCAAAGGCAGAGGTAAGCTTTGGTGAGGCAAATATGAACAGCAAGCTTGGTTATGGGAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

403

Amino Acids

45.72

Weight (kDa)

5.04

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	32 - 127	2.2e-24	MATH domain
MATH	PF00917	33 - 129	9.3e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	62
AasI	GACNNNNNNGTC	1 cut(s)	404
AccI	GTMKAC	2 cut(s)	6, 850
AccII	CGCG	1 cut(s)	1127
AciI	CCGC	3 cut(s)	94, 1096, 1127
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	104, 908
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	444, 943
AfaI	GTAC	2 cut(s)	67, 146
AfiI	CCNNNNNNNGG	1 cut(s)	1150
AgsI	TTSAA	8 cut(s)	151, 168, 371, 449, 495, 595, 932, 995
AjnI	CCWGG	2 cut(s)	630, 1143
Alw26I	GTCTC	2 cut(s)	947, 1067
AlwI	GGATC	2 cut(s)	104, 908
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	1 cut(s)	795
ApoI	RAATTY	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	406, 653
AsuHPI	GGTGA	2 cut(s)	196, 1181
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	1102
AvaII	GGWCC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	2 cut(s)	184, 886
BciT130I	CCWGG	2 cut(s)	632, 1145
BciVI	GTATCC	1 cut(s)	117
BclI	TGATCA	2 cut(s)	87, 613
BcoDI	GTCTC	2 cut(s)	947, 1067
BfaI	CTAG	2 cut(s)	1103, 1118
BfuI	GTATCC	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	1 cut(s)	796
BlsI	GCNGC	1 cut(s)	797
Bme1390I	CCNGG	2 cut(s)	632, 1145
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	2 cut(s)	406, 653
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	2 cut(s)	632, 1145
BmrI	ACTGGG	3 cut(s)	298, 641, 689
BmsI	GCATC	6 cut(s)	151, 271, 516, 526, 787, 934
BmtI	GCTAGC	1 cut(s)	1106
BmuI	ACTGGG	3 cut(s)	298, 641, 689
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	1001
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	559
BpuEI	CTTGAG	2 cut(s)	455, 991
Bsa29I	ATCGAT	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	1 cut(s)	1150
Bse1I	ACTGG	3 cut(s)	293, 647, 695
Bse3DI	GCAATG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	632, 1145
BseCI	ATCGAT	1 cut(s)	242
BseGI	GGATG	3 cut(s)	358, 778, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	1150
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	3 cut(s)	272, 305, 366
BseNI	ACTGG	3 cut(s)	293, 647, 695
BseRI	GAGGAG	1 cut(s)	959
BseXI	GCAGC	1 cut(s)	782
Bsh1236I	CGCG	1 cut(s)	1127
BshFI	GGCC	1 cut(s)	654
BshVI	ATCGAT	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	1150
BsmAI	GTCTC	2 cut(s)	947, 1067
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	1 cut(s)	654
Bso31I	GGTCTC	1 cut(s)	947
Bsp119I	TTCGAA	1 cut(s)	559
Bsp143I	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
BspACI	CCGC	3 cut(s)	94, 1096, 1127
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	3 cut(s)	271, 306, 367
BspDI	ATCGAT	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	1127
BspLI	GGNNCC	1 cut(s)	984
BspOI	GCTAGC	1 cut(s)	1106
BspPI	GGATC	2 cut(s)	104, 908
BspT104I	TTCGAA	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	3 cut(s)	293, 647, 695
BssMI	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
BssNAI	GTATAC	1 cut(s)	7
Bst1107I	GTATAC	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	632, 1145
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	800, 1079
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	531, 1104, 1190
BstDEI	CTNAG	3 cut(s)	258, 314, 375
BstENI	CCTNNNNNAGG	1 cut(s)	1148
BstF5I	GGATG	3 cut(s)	358, 778, 1063
BstFNI	CGCG	1 cut(s)	1127
BstKTI	GATC	7 cut(s)	90, 99, 611, 616, 708, 916, 1123
BstMAI	GTCTC	2 cut(s)	947, 1067
BstMBI	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 651, 839
BstNI	CCWGG	2 cut(s)	632, 1145
BstNSI	RCATGY	2 cut(s)	584, 820
BstSCI	CCNGG	2 cut(s)	630, 1143
BstUI	CGCG	1 cut(s)	1127
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	608
BstZ17I	GTATAC	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	654
BsuTUI	ATCGAT	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	3 cut(s)	358, 778, 1063
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	1 cut(s)	752
Cac8I	GCNNGC	3 cut(s)	531, 1104, 1190
Cfr13I	GGNCC	2 cut(s)	406, 653
ClaI	ATCGAT	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	66, 145
CspCI	CAANNNNNGTGG	2 cut(s)	920, 955
CviAII	CATG	8 cut(s)	19, 142, 307, 581, 817, 903, 911, 918
CviQI	GTAC	2 cut(s)	66, 145
DdeI	CTNAG	3 cut(s)	258, 314, 375
DpnI	GATC	7 cut(s)	89, 98, 610, 615, 707, 915, 1122
DpnII	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	800, 1079
EarI	CTCTTC	2 cut(s)	800, 1079
EciI	GGCGGA	2 cut(s)	109, 1111
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	444, 943
EcoNI	CCTNNNNNAGG	1 cut(s)	1148
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	630, 1143
FaeI	CATG	8 cut(s)	22, 145, 310, 584, 820, 906, 914, 921
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FatI	CATG	8 cut(s)	18, 141, 306, 580, 816, 902, 910, 917
FauNDI	CATATG	1 cut(s)	359
FbaI	TGATCA	2 cut(s)	87, 613
FblI	GTMKAC	2 cut(s)	6, 850
Fnu4HI	GCNGC	1 cut(s)	796
FokI	GGATG	3 cut(s)	365, 765, 1070
Fsp4HI	GCNGC	1 cut(s)	796
FspBI	CTAG	2 cut(s)	1103, 1118
GluI	GCNGC	1 cut(s)	796
GsuI	CTGGAG	1 cut(s)	1001
HaeIII	GGCC	1 cut(s)	654
Hin1II	CATG	8 cut(s)	22, 145, 310, 584, 820, 906, 914, 921
HincII	GTYRAC	1 cut(s)	851
HindII	GTYRAC	1 cut(s)	851
HindIII	AAGCTT	3 cut(s)	741, 1162, 1190
HinfI	GANTC	6 cut(s)	187, 470, 488, 572, 680, 899
HphI	GGTGA	2 cut(s)	196, 1181
Hpy166II	GTNNAC	4 cut(s)	7, 204, 851, 908
Hpy188I	TCNGA	7 cut(s)	315, 463, 487, 550, 613, 867, 962
Hpy188III	TCNNGA	2 cut(s)	434, 884
Hpy8I	GTNNAC	4 cut(s)	7, 204, 851, 908
HpyAV	CCTTC	6 cut(s)	332, 665, 792, 967, 1021, 1025
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	7 cut(s)	158, 275, 383, 539, 580, 859, 1133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 651, 839
HpyF3I	CTNAG	3 cut(s)	258, 314, 375
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	8 cut(s)	22, 145, 310, 584, 820, 906, 914, 921
Ksp22I	TGATCA	2 cut(s)	87, 613
Kzo9I	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
LmnI	GCTCC	2 cut(s)	117, 982
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	6 cut(s)	151, 271, 516, 526, 787, 934
MaeI	CTAG	2 cut(s)	1103, 1118
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	44, 171, 284
MalI	GATC	7 cut(s)	89, 98, 610, 615, 707, 915, 1122
MboI	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
MboII	GAAGA	7 cut(s)	450, 483, 773, 817, 920, 1024, 1096
MflI	RGATCY	1 cut(s)	608
MluCI	AATT	6 cut(s)	38, 69, 224, 544, 712, 1137
MlyI	GAGTC	1 cut(s)	196
MseI	TTAA	5 cut(s)	219, 228, 402, 1040, 1091
MslI	CAYNNNNRTG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	632, 1145
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	2 cut(s)	632, 1145
MvnI	CGCG	1 cut(s)	1127
MwoI	GCNNNNNNNGC	3 cut(s)	380, 651, 839
NdeI	CATATG	1 cut(s)	359
NdeII	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
NheI	GCTAGC	1 cut(s)	1102
NlaIII	CATG	8 cut(s)	22, 145, 310, 584, 820, 906, 914, 921
NlaIV	GGNNCC	1 cut(s)	984
NmeAIII	GCCGAG	2 cut(s)	223, 1138
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	2 cut(s)	584, 820
NspV	TTCGAA	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	5 cut(s)	470, 488, 572, 680, 899
PkrI	GCNGC	1 cut(s)	797
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	406
PsiI	TTATAA	1 cut(s)	62
Psp1406I	AACGTT	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	630, 1143
PspGI	CCWGG	2 cut(s)	630, 1143
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	2 cut(s)	406, 653
PspPPI	RGGWCCY	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	2 cut(s)	67, 146
RsaNI	GTAC	2 cut(s)	66, 145
RseI	CAYNNNNRTG	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	849
SaqAI	TTAA	5 cut(s)	219, 228, 402, 1040, 1091
SatI	GCNGC	1 cut(s)	796
Sau3AI	GATC	7 cut(s)	87, 96, 608, 613, 705, 913, 1120
Sau96I	GGNCC	2 cut(s)	406, 653
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	632, 1145
SfaNI	GCATC	6 cut(s)	151, 271, 516, 526, 787, 934
SfuI	TTCGAA	1 cut(s)	559
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	434, 970
SmoI	CTYRAG	2 cut(s)	434, 970
Sse9I	AATT	6 cut(s)	38, 69, 224, 544, 712, 1137
SsiI	CCGC	3 cut(s)	94, 1096, 1127
SspI	AATATT	1 cut(s)	482
SspMI	CTAG	2 cut(s)	1103, 1118
StyD4I	CCNGG	2 cut(s)	630, 1143
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	5 cut(s)	190, 242, 559, 666, 850
TasI	AATT	6 cut(s)	38, 69, 224, 544, 712, 1137
TatI	WGTACW	2 cut(s)	65, 144
TfiI	GAWTC	5 cut(s)	470, 488, 572, 680, 899
Tru1I	TTAA	5 cut(s)	219, 228, 402, 1040, 1091
Tru9I	TTAA	5 cut(s)	219, 228, 402, 1040, 1091
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	795
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	7 cut(s)	295, 534, 693, 891, 1025, 1097, 1196
TspRI	CASTG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	1148
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	2 cut(s)	584, 820
XmiI	GTMKAC	2 cut(s)	6, 850
XspI	CTAG	2 cut(s)	1103, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.