Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0003898

Physical Location & Seq

Genomic Coordinates Reverse (-)

414163 .. 414785

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000092.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgcaatcaaagatcagtgccttcttcaaaccctcttcttcttctgtttcccccaaaccagcagacccacctcccattttcgacgacgacggccaggaattgagcatctgggaaaagaagcaacaccaacaattctccacctacaagcgaagagctccaaacccgccaagttgggataaccagttggcaaagacacccatttcggatgtcgactctcccaagcctgaatcgacagtattgggaaagacagtgaccaagaacaagaagagaagctatgctcagtaccatttagacttgggtcagtctgactttcttctgcacacttgttccgcatgcggggtcatgtatgtgactggagatgaagaggatgagaaggctcacaagggatttcacaatgactatacccgcggaatacaattcaaggtgcaactctcccaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000278 GO:0000280 GO:0000724 GO:0000725 GO:0000819 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007135 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009956 GO:0009987 GO:0010154 GO:0016043 GO:0016407 GO:0016740 GO:0016746 GO:0016747 GO:0022402 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034085 GO:0034089 GO:0034641 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045144 GO:0046483 GO:0048229 GO:0048285 GO:0048316 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048589 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051177 GO:0051276 GO:0051321 GO:0051716 GO:0060771 GO:0060772 GO:0061458 GO:0061983 GO:0070192 GO:0071704 GO:0071840 GO:0080186 GO:0090304 GO:0090567 GO:0098813 GO:0099402 GO:0140013 GO:0140014 GO:1901360 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_13 zf-C2H2_3

Protein Analysis

147

Amino Acids

16.55

Weight (kDa)

7.77

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31400 AT4G31400
fragaria_vesca	FvH4_6g20270
malus_domestica	MD10G1054000.v1.1 MD12G1039800.v1.1 MD14G1038400.v1.1
prunus_persica	Prupe.7G095100_v2.0.a1
pyrus_communis	pycom01g00980 pycom12g03380
rosa_chinensis	RchiOBHm_Chr1g0331051 RchiOBHm_Chr3g0475861
rosa_laevigata	RLG00000001160 RLG00000023805 RLG00000029757
rosa_multiflora	Rmu_sc0000539.1_g000091 Rmu_sc0000539.1_g000092 Rmu_sc0002515.1_g000002
rosa_roxburghii	Rroxscaffold_3G00226030 Rroxscaffold_4G00319510 Rroxscaffold_6G00405780
rosa_rugosa	Rorug01G0093800 Rorug03G0151800 Rorug07G0290800
rosa_samantha	Rh1AG113600 Rh1CG110400 Rh1DG119200 Rh3AG201800 Rh3BG232300 Rh3CG226900 Rh3DG227400 Rh7BG417600 Rh7CG466100
rosa_wichuraiana	Rw1G009260 Rw3G018370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	408
AciI	CCGC	5 cut(s)	164, 330, 336, 406, 408
AcoI	YGGCCR	1 cut(s)	91
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	28, 421
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	155, 273
AluI	AGCT	2 cut(s)	155, 273
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	91
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	114
BoxI	GACNNNNGTC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	181, 358
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	2 cut(s)	211, 373
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	181, 358
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	336
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	5 cut(s)	164, 330, 336, 406, 408
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	181, 358
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	235, 250
Bst6I	CTCTTC	4 cut(s)	40, 145, 260, 357
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	211, 373
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	336
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	211, 373
BtsIMutI	CAGTG	2 cut(s)	22, 255
Cac8I	GCNNGC	1 cut(s)	334
Cfr42I	CCGCGG	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	333, 343
CviJI	RGCY	6 cut(s)	93, 155, 223, 273, 377, 440
CviKI_1	RGCY	6 cut(s)	93, 155, 223, 273, 377, 440
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	4 cut(s)	40, 145, 260, 357
EarI	CTCTTC	4 cut(s)	40, 145, 260, 357
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	2 cut(s)	336, 346
FaiI	YATR	5 cut(s)	276, 334, 344, 348, 402
FatI	CATG	2 cut(s)	332, 342
FauI	CCCGC	3 cut(s)	171, 329, 413
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	2 cut(s)	218, 380
FriOI	GRGCYC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	336, 346
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	212, 227
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	205, 307
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	3 cut(s)	86, 89, 92
HpyAV	CCTTC	2 cut(s)	31, 367
HpyCH4III	ACNGT	2 cut(s)	235, 250
HpyCH4V	TGCA	3 cut(s)	4, 319, 427
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	336, 346
KspI	CCGCGG	1 cut(s)	409
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	72, 80, 94, 107, 194, 237, 339
LweI	GCATC	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	250, 349
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	8 cut(s)	16, 27, 30, 33, 162, 277, 305, 374
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	3 cut(s)	98, 131, 416
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	43, 81, 358
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	408
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	336, 346
NmuCI	GTSAC	2 cut(s)	250, 349
NspI	RCATGY	1 cut(s)	336
PaeI	GCATGC	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PshAI	GACNNNNGTC	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	157
SacII	CCGCGG	1 cut(s)	409
SalI	GTCGAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	5 cut(s)	73, 143, 157, 275, 426
SfaNI	GCATC	1 cut(s)	114
Sfr303I	CCGCGG	1 cut(s)	409
SgrBI	CCGCGG	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	336
Sse9I	AATT	3 cut(s)	98, 131, 416
SsiI	CCGC	5 cut(s)	164, 330, 336, 406, 408
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	235, 250
TaqI	TCGA	3 cut(s)	81, 210, 230
TasI	AATT	3 cut(s)	98, 131, 416
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	2 cut(s)	22, 255
TseFI	GTSAC	2 cut(s)	250, 349
Tsp45I	GTSAC	2 cut(s)	250, 349
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	22, 255
XceI	RCATGY	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.